Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015834.1 Corchorus capsularis cultivar CVL-1 contig15855, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25399

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
387--452
29
2.3
29
100
0
132
40
9
9
40
1.68
539--899
188
1.9
186
91
5
597
42
11
9
35
1.75
3666--3734
35
2.0
35
89
10
108
52
2
17
27
1.59
18125--18153
2
14.5
2
100
0
58
51
0
0
48
1.00
19514--19551
12
3.2
12
85
3
51
39
0
5
55
1.23
19592--19644
27
2.0
27
85
3
72
43
7
3
45
1.50
20553--20603
16
3.2
16
77
5
50
31
0
7
60
1.25
20560--20617
31
2.0
31
83
10
77
36
0
5
58
1.20
21186--21224
14
2.7
15
88
8
62
41
0
5
53
1.23
21162--21234
19
4.1
18
74
15
62
38
0
4
57
1.18
21168--21237
36
2.1
32
86
10
95
38
0
4
57
1.19
22298--22323
2
13.0
2
100
0
52
0
50
0
50
1.00
22656--22692
3
12.3
3
94
0
65
62
0
2
35
1.10
23403--23458
29
1.9
29
88
0
85
50
5
3
41
1.43
24986--25015
15
1.9
16
93
6
53
70
10
0
20
1.16
25073--25108
2
18.5
2
94
5
65
52
0
0
47
1.00

Tables:   1

The End!