Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015837.1 Corchorus capsularis cultivar CVL-1 contig15858, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75866

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3429--3506
27
3.0
26
75
12
79
16
20
26
35
1.94
12147--12288
75
1.9
76
88
1
214
38
9
20
31
1.84
12163--12510
174
2.0
174
98
0
678
38
10
17
33
1.83
12846--12890
10
4.3
10
78
10
54
84
0
15
0
0.62
12857--12894
12
3.1
12
85
7
58
84
0
15
0
0.63
12850--12903
15
3.4
17
78
14
62
81
0
18
0
0.69
12847--12900
22
2.4
23
84
6
67
83
0
16
0
0.65
12848--12902
16
3.4
16
80
12
67
83
0
16
0
0.64
12909--13057
45
3.3
45
86
6
212
36
7
18
37
1.79
13390--13428
15
2.5
15
87
4
51
71
0
23
5
1.05
13417--13464
24
2.0
24
91
4
78
62
0
18
18
1.33
13775--13809
6
5.5
6
87
12
52
85
0
14
0
0.59
13779--13815
14
2.6
14
95
4
65
83
0
16
0
0.64
13775--13826
14
3.9
13
85
9
61
78
0
19
1
0.84
14657--14788
69
1.9
69
84
3
176
25
29
18
27
1.98
14924--15208
47
6.0
47
89
1
419
19
23
21
35
1.96
14935--15212
142
2.0
139
85
4
353
20
23
21
34
1.97
21396--21429
18
1.9
18
94
5
52
79
0
20
0
0.73
25277--25343
8
9.3
7
79
14
66
80
0
17
1
0.79
25290--25332
9
5.1
8
84
15
52
81
0
18
0
0.69
25276--25343
23
3.1
23
83
6
79
80
0
17
1
0.78
25276--25343
15
4.5
15
77
18
70
80
0
17
1
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25614--25761
50
3.0
50
95
0
260
34
13
12
39
1.83
26279--26620
70
4.9
70
88
3
510
25
27
17
29
1.98
26813--27404
8
79.6
8
65
20
116
28
23
5
42
1.75
26808--27391
22
25.9
22
70
18
189
28
23
5
42
1.75
26808--27234
14
29.5
14
67
20
147
29
22
3
43
1.71
26808--27472
36
17.4
37
66
18
171
28
22
5
43
1.75
27107--27148
20
2.1
20
86
8
59
28
16
11
42
1.84
27184--27492
22
13.0
24
69
18
91
28
22
6
42
1.79
27308--27611
14
22.1
14
65
25
82
29
20
5
44
1.74
27404--27492
22
4.1
22
85
7
101
31
17
5
44
1.72
27416--27492
8
10.4
8
76
16
67
29
18
5
46
1.70
27416--27506
22
4.1
22
87
5
121
30
19
4
45
1.70
27416--27529
44
2.6
44
84
2
131
32
19
4
43
1.70
27327--27550
58
3.9
58
74
13
174
30
20
5
42
1.75
27488--27554
22
3.1
21
78
6
64
34
20
4
40
1.73
28515--28547
14
2.4
14
90
5
50
33
15
9
42
1.78
30876--30903
7
4.0
7
100
0
56
42
0
14
42
1.45
31477--34473
882
3.4
878
92
1
4848
35
15
14
34
1.88
37048--37189
50
2.9
50
95
1
250
21
13
35
30
1.91
37748--37825
26
3.1
26
78
17
110
24
19
23
33
1.97
37743--37815
23
3.1
22
78
17
92
21
20
21
35
1.96
43837--43980
50
2.9
50
95
1
254
20
14
36
28
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48654--48721
33
2.0
34
97
2
129
38
14
30
16
1.89
52367--55066
891
3.0
883
91
1
4460
35
15
14
34
1.88
63898--63939
17
2.5
17
80
7
50
16
9
16
57
1.65
66203--66245
16
2.8
15
86
6
68
25
4
20
48
1.69
69859--69902
16
2.7
16
92
3
70
25
0
22
52
1.48
70017--70078
27
2.4
26
84
7
74
59
1
8
30
1.36
70890--71221
167
2.0
167
86
2
461
39
16
14
29
1.89
71275--71363
44
2.0
45
91
2
144
24
23
17
33
1.96
71603--71648
19
2.3
20
85
10
60
45
4
6
43
1.49
72677--72790
41
2.8
40
76
5
113
40
28
13
18
1.88

Tables:   1

The End!