Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015838.1 Corchorus capsularis cultivar CVL-1 contig15859, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40049

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87--193
33
3.3
31
79
10
117
12
36
34
16
1.86
10558--10627
12
5.8
12
78
6
79
17
21
22
38
1.93
13860--14062
32
6.2
32
82
7
221
29
21
6
42
1.78
13847--14042
100
2.0
99
87
3
286
29
21
6
42
1.78
14037--14189
37
4.2
37
84
5
195
27
22
7
42
1.81
14199--14336
36
3.9
36
78
11
106
23
15
13
47
1.82
14217--14336
36
3.4
34
77
12
107
24
14
13
48
1.79
14217--14351
71
1.9
73
80
9
161
23
14
12
48
1.78
14285--14501
41
5.5
39
86
7
180
23
20
11
44
1.84
14322--14505
41
4.5
41
91
4
284
23
21
10
44
1.83
14502--14612
40
2.8
40
92
0
186
26
14
9
49
1.74
14606--14861
70
3.8
69
86
8
364
28
20
9
41
1.84
14676--14773
31
3.2
31
63
16
76
29
19
9
41
1.82
14738--14862
41
3.3
41
68
25
130
29
18
8
43
1.80
14606--14857
132
1.9
132
92
0
423
28
20
9
41
1.84
14828--14954
60
2.1
60
91
0
200
20
19
10
49
1.77
14917--14973
19
3.0
19
86
0
78
14
17
12
56
1.68
14864--15009
79
1.9
78
92
1
247
20
18
10
50
1.77
14922--14979
19
3.1
19
78
14
66
17
17
10
55
1.69
17744--17789
7
7.3
6
88
11
58
0
17
0
82
0.67
17753--17790
7
5.6
7
90
3
60
0
15
0
84
0.63
17747--17799
20
2.7
19
82
8
70
0
18
0
81
0.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20397--20461
30
2.2
30
85
0
85
55
7
13
23
1.64
27251--27295
20
2.2
20
96
0
81
33
35
4
26
1.77
29484--29605
62
2.0
62
98
0
235
30
13
24
31
1.94
34343--34383
20
2.0
20
85
0
55
58
21
4
14
1.55
37521--37587
34
2.0
33
86
11
93
44
7
0
47
1.31

Tables:   1

The End!