Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015851.1 Corchorus capsularis cultivar CVL-1 contig15872, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16678

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3914--3998
22
3.9
22
83
6
109
16
21
36
25
1.94
3914--3997
44
1.9
44
87
4
125
15
21
36
26
1.93
4591--4639
21
2.6
17
77
22
62
18
24
16
40
1.90
6048--6105
27
2.1
27
90
0
89
31
18
10
39
1.85
6439--6472
2
17.5
2
93
6
61
50
0
50
0
1.00
6440--6469
15
2.0
15
100
0
60
46
0
53
0
1.00
6439--6471
17
1.9
17
100
0
66
48
0
51
0
1.00
8463--8545
43
1.9
44
87
7
125
46
6
19
27
1.73
8818--8869
22
2.4
22
87
9
72
30
11
38
19
1.87
8836--8884
22
2.2
22
88
0
71
28
14
32
24
1.94
12153--12195
21
2.0
21
86
0
59
20
23
32
23
1.98
14140--14165
10
2.6
10
100
0
52
50
19
7
23
1.73
15351--15390
21
2.0
21
85
5
55
27
22
5
45
1.73

Tables:   1

The End!