Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015854.1 Corchorus capsularis cultivar CVL-1 contig15875, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108372

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
187--294
22
4.9
22
89
4
130
14
22
37
25
1.92
932--979
15
2.9
17
75
12
64
16
27
16
39
1.90
932--998
36
2.0
33
88
11
100
16
28
16
38
1.90
3944--3979
19
1.9
19
88
5
56
33
16
2
47
1.61
5218--5251
11
3.2
10
84
15
50
50
17
2
29
1.61
6370--6418
6
7.8
6
86
8
71
0
12
4
83
0.77
9397--9440
19
2.4
19
85
7
56
34
4
52
9
1.54
21730--22216
69
7.0
69
94
0
848
36
19
18
25
1.94
31103--31175
37
1.9
38
86
2
103
56
4
9
30
1.50
32900--32933
11
3.2
10
84
15
50
50
17
2
29
1.61
34388--34804
138
3.0
138
95
0
762
46
21
12
19
1.83
35051--35089
18
2.2
18
86
9
53
17
38
7
35
1.79
35136--35198
30
2.1
30
88
5
92
19
36
15
28
1.92
38899--39173
138
2.0
138
94
1
480
47
21
12
19
1.82
39515--39571
30
1.9
30
92
7
98
19
33
15
31
1.93
42573--42623
25
2.0
26
81
11
61
49
5
0
45
1.26
51641--51674
11
3.2
10
84
15
50
50
17
2
29
1.61
52489--52526
6
6.5
6
96
3
69
55
13
0
31
1.38
53278--53305
6
4.7
6
100
0
56
28
0
35
35
1.58
54038--54079
10
3.9
11
78
15
52
64
2
7
26
1.32
55691--55735
13
3.7
13
80
17
60
8
24
51
15
1.72
55682--55745
23
2.7
23
95
2
110
9
25
50
15
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55682--55746
10
5.8
10
75
21
58
9
26
49
15
1.74
62806--62839
17
2.0
17
100
0
68
23
11
11
52
1.70
66441--66473
9
3.8
9
84
8
50
75
12
0
12
1.04
81181--81261
33
2.5
33
83
0
90
14
25
44
14
1.84
90475--90542
30
2.3
30
92
0
109
7
29
45
17
1.75
98808--98855
21
2.3
21
74
0
51
10
41
25
22
1.85
101434--101519
42
2.0
42
93
4
147
18
16
18
46
1.84
102896--102921
6
4.3
6
100
0
52
84
0
0
15
0.62
106045--106098
21
2.6
21
76
2
56
22
31
37
9
1.86

Tables:   1

The End!