Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015857.1 Corchorus capsularis cultivar CVL-1 contig15878, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6748

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3829--3867
10
3.8
10
86
6
60
79
0
10
10
0.94
3829--3868
11
3.7
11
83
3
55
80
0
10
10
0.92
4259--4323
22
3.1
21
80
17
73
76
4
0
18
0.95
4259--4334
18
3.8
20
81
18
70
76
3
0
19
0.94
4272--4334
4
17.0
4
75
22
50
76
3
0
20
0.93
4300--4332
10
3.3
10
88
12
50
78
0
0
21
0.75
5047--5250
104
2.0
104
98
0
390
32
13
19
34
1.90
6162--6235
22
3.2
22
74
10
85
31
24
17
27
1.97
6172--6251
25
3.3
25
75
10
103
25
26
21
27
1.99
6145--6253
47
2.3
47
98
0
209
28
25
20
25
1.99
6184--6256
22
3.2
23
70
20
64
28
24
19
27
1.98
6378--6451
22
3.2
22
70
10
67
32
21
17
28
1.96
6361--6469
47
2.3
47
98
0
209
29
24
20
25
1.99
6090--6736
216
3.0
216
92
1
1062
29
21
18
30
1.97
6582--6656
22
3.3
22
67
10
69
29
30
18
21
1.97
6578--6670
47
2.0
47
93
4
161
30
25
18
25
1.98

Tables:   1

The End!