genome.fa.s15860.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015860.1 Corchorus capsularis cultivar CVL-1 contig15881, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59642

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2185--2293	58	1.9	58	86	1	157	23	20	10	45	1.81
2327--2724	35	11.6	34	81	10	413	32	18	10	38	1.85
2327--2724	105	3.9	103	84	8	501	32	18	10	38	1.85
4939--4968	2	15.0	2	100	0	60	50	0	0	50	1.00
14615--14640	13	2.0	13	100	0	52	69	7	7	15	1.35
15881--15917	19	2.0	18	89	5	56	29	21	8	40	1.82
22125--22154	2	15.5	2	93	6	53	0	0	50	50	1.00
25195--25243	24	2.0	25	96	4	91	48	16	2	32	1.57
33113--33359	75	3.3	74	78	1	206	28	14	18	38	1.91
34898--34983	30	2.8	30	83	1	118	13	30	37	18	1.90
35521--35583	32	2.0	32	90	6	101	31	11	3	53	1.52
36018--36042	5	5.0	5	100	0	50	20	0	0	80	0.72
44585--44650	31	2.1	32	91	5	109	28	19	4	46	1.69
44750--44826	22	3.5	21	85	5	82	33	14	20	31	1.93
44763--44879	22	5.2	22	78	4	90	29	11	20	38	1.87
44918--45048	22	6.0	22	69	11	72	35	11	19	34	1.87
44999--45305	22	13.8	22	68	19	104	40	9	14	35	1.78
45133--45171	21	2.0	19	85	14	53	46	5	7	41	1.55
45092--45330	44	5.4	44	72	11	150	41	9	13	35	1.77
45059--45302	66	3.7	65	72	11	194	41	9	14	34	1.78
45345--45988	22	29.9	21	66	15	185	38	8	15	36	1.79
45384--45900	44	11.9	44	72	10	251	37	8	16	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45481--45721	126	1.9	127	80	0	286	40	7	15	36	1.76
45598--45723	45	2.8	44	80	8	139	39	6	14	39	1.71
45621--45682	23	2.8	22	85	2	79	41	3	12	41	1.59
46109--46137	2	14.5	2	100	0	58	48	0	0	51	1.00
46164--46201	15	2.5	15	87	12	51	26	5	0	68	1.11
47476--47830	179	2.0	179	97	0	665	33	18	21	27	1.96
48961--49051	45	2.0	45	91	4	148	39	16	16	27	1.90
51746--51803	30	1.9	30	85	0	80	22	27	24	25	2.00
51752--51816	30	2.2	30	82	0	76	23	30	20	26	1.98
54313--54374	28	2.2	28	97	0	115	41	12	19	25	1.87
57091--57129	18	2.2	18	95	0	69	53	17	0	28	1.44
58156--58186	2	15.5	2	93	0	53	48	0	3	48	1.17

Tables:   1

The End!