genome.fa.s15861.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015861.1 Corchorus capsularis cultivar CVL-1 contig15882, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92614

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2510--2570	22	2.8	22	80	9	70	42	8	9	39	1.68
3546--3884	178	1.9	179	84	5	463	34	14	17	33	1.90
4374--4427	27	2.0	27	85	0	72	24	12	0	62	1.30
4668--4736	21	3.4	21	70	11	72	47	18	8	24	1.77
12071--12132	30	2.1	30	90	0	97	11	24	41	22	1.86
17663--17766	36	2.8	36	82	5	111	44	9	20	25	1.82
17764--17789	12	2.2	12	100	0	52	61	7	23	7	1.49
17781--18407	11	56.6	11	74	2	439	49	10	16	23	1.76
17808--18407	33	18.0	33	80	1	561	50	10	16	23	1.75
18409--18928	36	14.6	36	84	4	626	45	9	21	24	1.81
18409--18928	140	3.7	141	88	3	697	45	9	21	24	1.81
18946--19064	36	3.4	34	79	17	138	45	7	18	28	1.77
18936--19064	68	1.9	68	90	6	208	46	6	17	28	1.74
18936--19043	32	3.2	32	79	14	128	46	6	17	29	1.73
22094--22153	25	2.4	25	100	0	120	31	11	20	36	1.88
23075--23136	30	2.1	30	90	0	97	11	24	41	22	1.86
26158--26195	5	7.2	5	96	3	58	57	0	0	42	0.98
27569--27886	158	2.0	158	100	0	636	37	9	18	34	1.83
30111--30136	12	2.2	12	100	0	52	26	0	26	46	1.53
33269--33633	22	16.8	21	69	13	170	37	10	15	36	1.82
33693--33844	62	2.5	62	89	2	225	40	10	13	35	1.79
33755--33800	22	2.1	22	88	8	67	43	10	13	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52707--52983	137	2.0	137	100	0	554	35	12	12	39	1.81
54716--54777	30	2.1	30	100	0	124	51	6	19	22	1.69
54758--54829	37	1.9	37	91	0	117	44	5	27	22	1.75
56636--56789	70	2.2	70	89	2	229	50	1	12	35	1.48
57798--57825	5	5.6	5	100	0	56	60	21	0	17	1.36
61518--61543	11	2.4	11	100	0	52	26	0	38	34	1.57
61560--61592	15	2.2	15	89	10	50	36	0	0	63	0.95
63596--63624	14	2.0	15	93	6	51	27	13	3	55	1.55
65018--65055	19	2.0	19	89	0	58	57	5	0	36	1.21
69019--69143	33	3.8	35	80	16	133	14	35	37	12	1.84
69020--69199	33	5.5	33	73	16	117	15	33	37	13	1.87
69774--69932	22	7.2	22	72	11	74	38	17	11	32	1.85
69942--69988	22	2.1	22	88	0	67	42	12	10	34	1.78
69953--70244	22	13.6	21	72	13	152	35	14	9	40	1.79
69999--70078	23	3.5	22	80	14	83	38	11	6	43	1.66
69973--70078	45	2.3	45	81	9	126	36	11	9	42	1.73
70350--70826	22	21.8	21	65	15	125	35	17	9	37	1.82
71581--71666	42	2.0	42	97	0	163	50	16	12	20	1.78
72341--72365	2	12.5	2	100	0	50	52	0	0	48	1.00
72468--72544	39	2.0	39	82	5	93	31	12	14	41	1.83
72515--72579	34	1.9	34	87	6	96	29	13	13	43	1.83
72635--72696	24	2.4	26	78	15	74	33	0	32	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73791--73849	30	1.9	31	86	10	86	52	3	8	35	1.49
73712--74025	155	2.0	157	89	2	481	47	4	11	35	1.61
73932--74003	30	2.4	31	86	6	103	44	2	16	36	1.63
74950--74980	2	15.5	2	100	0	62	51	0	0	48	1.00
74987--75011	12	2.1	12	100	0	50	24	0	24	52	1.48
75433--75475	19	2.1	21	84	16	56	27	6	2	62	1.33
75640--75743	22	4.6	22	74	11	95	36	8	17	37	1.80
75642--75728	44	2.0	43	84	6	113	35	9	18	36	1.83
75715--75782	26	2.7	26	77	4	68	32	7	22	38	1.81
75820--75878	22	2.7	22	82	10	75	37	8	16	37	1.80
75884--76201	22	14.3	21	68	16	126	39	9	15	34	1.81
76033--76223	44	4.4	44	76	7	167	43	9	13	34	1.76
76321--76884	22	25.9	22	69	9	210	38	10	15	34	1.82
76318--76887	44	13.1	44	68	11	237	38	10	15	34	1.82
76514--76593	23	3.5	23	81	1	90	38	8	15	37	1.78
78300--78365	31	2.1	31	86	5	89	30	18	4	46	1.68
78306--78372	31	2.1	31	83	8	82	34	14	4	46	1.65
78253--78581	163	2.0	162	95	2	588	35	14	6	43	1.72
78463--78528	31	2.1	31	88	5	98	30	19	4	45	1.70
78852--78985	23	6.3	22	76	11	127	35	9	17	36	1.83
78879--78985	45	2.4	44	84	6	126	35	10	16	37	1.83
78947--79006	22	2.7	22	84	5	77	33	13	13	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79168--79231	22	2.9	22	78	0	74	35	9	15	39	1.80
79201--79355	62	2.5	62	93	0	265	42	8	13	35	1.75
79256--79360	22	5.0	22	69	21	71	41	7	12	38	1.71
79413--79452	2	20.0	2	100	0	80	50	0	0	50	1.00
86038--86089	20	2.6	19	90	3	77	48	0	23	28	1.51
86220--86295	37	2.1	37	89	0	116	30	6	19	43	1.76
87778--87822	18	2.4	18	81	7	54	55	8	0	35	1.31
91373--91410	17	2.3	17	86	4	51	55	0	39	5	1.23
91578--92153	291	2.0	291	97	0	1080	28	14	22	34	1.93

Tables:   1

The End!