Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015862.1 Corchorus capsularis cultivar CVL-1 contig15883, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31409

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--360
188
1.9
189
98
0
704
36
11
20
31
1.89
1708--1766
25
2.4
25
88
5
86
35
22
0
42
1.54
1786--1834
11
4.1
11
76
19
53
53
10
2
34
1.47
1776--1843
26
2.6
26
93
4
111
52
10
1
35
1.44
1776--1819
15
3.2
15
75
24
60
52
11
0
36
1.38
1776--1843
15
5.1
14
70
26
58
52
10
1
35
1.44
2210--2242
17
1.9
17
93
0
57
33
3
30
33
1.73
2571--2688
23
5.3
23
77
9
86
37
14
8
39
1.76
2640--2757
60
1.9
62
83
6
152
34
15
7
42
1.75
2573--2803
128
1.8
127
82
2
302
34
16
8
40
1.79
2303--2861
22
25.6
22
69
10
193
35
15
9
40
1.80
2812--2861
20
2.5
20
93
0
82
30
18
10
42
1.82
3564--3614
26
1.9
27
84
4
68
52
3
0
43
1.19
4089--4153
30
2.1
31
91
2
105
49
4
18
27
1.67
4558--4629
35
2.1
35
100
0
144
40
22
20
16
1.91
17997--18102
41
2.6
41
87
0
158
36
13
13
36
1.83
18138--18167
15
1.9
16
93
6
53
63
10
6
20
1.47
19462--19708
78
3.2
78
92
1
406
51
0
12
36
1.43
20100--20132
7
4.7
7
100
0
66
15
15
42
27
1.86
20234--20321
32
2.8
32
89
8
144
38
9
21
30
1.85
20505--20566
32
1.9
32
100
0
124
41
6
19
32
1.77
26799--26843
22
2.1
21
87
4
63
62
2
0
35
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26863--26905
14
2.8
15
86
10
52
51
2
0
46
1.13
26874--26903
12
2.5
12
94
0
51
53
0
0
46
1.00
28169--28198
3
10.3
3
92
7
53
30
0
36
33
1.58
29262--29305
12
3.6
12
93
6
79
25
22
15
36
1.94
30932--30986
12
4.5
12
93
4
92
25
21
16
36
1.94
30932--30986
25
2.2
24
93
3
92
25
21
16
36
1.94
31076--31118
21
2.1
21
91
4
70
18
39
9
32
1.83
31189--31250
24
2.5
25
82
10
83
35
24
0
40
1.55
31258--31325
26
2.6
26
95
0
118
52
11
1
33
1.47
31258--31325
15
5.1
15
70
26
62
52
11
1
33
1.47

Tables:   1

The End!