Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015866.1 Corchorus capsularis cultivar CVL-1 contig15887, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29367

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
508--566
17
3.7
16
80
15
77
57
0
40
1
1.09
9259--9320
18
3.4
18
93
0
97
16
29
20
33
1.94
11859--11897
16
2.4
17
87
12
55
20
10
5
64
1.44
19463--19523
31
2.0
30
84
9
79
31
14
1
52
1.52
19831--19951
44
2.8
44
77
5
127
42
11
13
33
1.80
19823--19951
22
5.9
22
77
2
107
41
10
14
33
1.81
20038--20263
22
10.5
21
68
18
94
39
8
15
35
1.79
20096--20261
22
7.7
22
76
10
137
37
7
18
36
1.79
20206--20274
22
3.1
22
82
0
75
34
10
15
39
1.82
20473--20529
22
2.6
22
82
0
60
36
10
14
38
1.80
20499--20623
62
2.0
62
93
0
214
42
9
14
33
1.78
20498--20606
22
5.1
22
68
22
72
43
10
14
32
1.79
23461--23500
20
2.0
20
90
9
64
50
17
0
32
1.47
26102--26131
15
1.9
16
93
6
53
13
0
53
33
1.40
27373--27837
119
3.9
119
92
2
747
26
24
11
37
1.90
27373--27837
237
2.0
238
91
2
756
26
24
11
37
1.90
27775--27897
65
1.9
64
81
8
151
21
23
13
40
1.89

Tables:   1

The End!