Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015867.1 Corchorus capsularis cultivar CVL-1 contig15888, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31325

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3072--3096
13
1.9
13
100
0
50
36
0
16
48
1.46
3922--4027
30
3.6
30
88
2
151
48
16
25
10
1.77
4240--4301
3
20.7
3
100
0
124
66
0
33
0
0.92
4321--4365
15
3.0
15
86
0
63
20
28
28
22
1.98
8430--8456
2
13.5
2
100
0
54
48
0
0
51
1.00
9001--9265
76
3.5
75
86
3
329
18
20
25
34
1.96
19095--19142
21
2.3
20
79
10
51
35
22
31
10
1.88
21093--21199
33
3.2
33
89
0
151
24
39
28
7
1.82
24945--25075
65
2.0
65
100
0
262
22
27
20
29
1.99
28729--28759
5
6.2
5
92
0
53
19
0
0
80
0.71
29809--29871
33
1.9
33
90
3
101
12
30
34
22
1.91

Tables:   1

The End!