Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015869.1 Corchorus capsularis cultivar CVL-1 contig15890, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29697

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1087--1131
21
2.1
22
83
4
56
17
26
8
46
1.78
1268--1373
32
3.3
32
85
4
133
13
40
36
9
1.77
2186--2211
2
13.0
2
100
0
52
50
0
0
50
1.00
2877--2972
38
2.6
37
83
6
122
14
18
10
56
1.66
3030--3151
22
5.6
21
76
10
86
41
10
13
33
1.80
3274--3831
44
12.8
44
70
15
229
37
9
15
37
1.80
3462--3519
23
2.5
23
88
0
80
36
6
13
43
1.71
3259--3831
22
26.5
21
67
14
195
37
9
16
36
1.81
3618--3703
45
1.9
45
80
4
102
34
9
15
40
1.79
3816--3923
40
2.7
40
88
0
153
47
8
10
34
1.68
5905--5979
27
2.8
26
83
4
87
18
14
25
41
1.89
7180--7212
16
2.0
17
88
5
50
12
45
12
30
1.78
11017--11066
20
2.4
21
80
6
57
10
14
2
74
1.16
13694--13730
19
1.9
19
94
0
65
32
16
37
13
1.87
16348--16384
18
2.0
18
89
5
56
18
13
10
56
1.66
19117--19173
28
2.0
28
90
6
89
22
3
14
59
1.50
20536--20629
46
2.0
46
93
0
161
28
24
8
38
1.85
25226--25287
21
3.0
21
74
9
72
37
19
8
35
1.81
26457--26496
20
2.0
20
90
5
62
40
10
27
22
1.86

Tables:   1

The End!