Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001587.1 Corchorus capsularis cultivar CVL-1 contig01587, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 709

Length: 1182
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34


Found at i:542 original size:19 final size:19

Alignment explanation


    Indices: 518--558  Score: 82
    Period size: 19  Copynumber: 2.2  Consensus size: 19

        508 ATTTATCCAT

                               
        518 TCTTTTCCATTTGTATCTA
          1 TCTTTTCCATTTGTATCTA

                               
        537 TCTTTTCCATTTGTATCTA
          1 TCTTTTCCATTTGTATCTA

               
        556 TCT
          1 TCT

        559 GTTTGTTATA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   22  1.00

ACGTcount: A:0.15, C:0.22, G:0.05, T:0.59


Consensus pattern (19 bp):   
TCTTTTCCATTTGTATCTA
Done.