Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015875.1 Corchorus capsularis cultivar CVL-1 contig15896, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6237
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33


Found at i:5329 original size:21 final size:21

Alignment explanation


    Indices: 5305--5346  Score: 59
    Period size: 20  Copynumber: 2.0  Consensus size: 21

       5295 TGAGGCAAAC

                                  
       5305 CACATGGGGCGCCAAGC-ATAG
          1 CACAT-GGGCGCCAAGCTATAG

                        *        
       5326 CACATGGGCGCCCAGCTATAG
          1 CACATGGGCGCCAAGCTATAG

       5347 TCGAGACATG


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  20   10  0.53
  21    9  0.47

ACGTcount: A:0.26, C:0.31, G:0.31, T:0.12


Consensus pattern (21 bp):   
CACATGGGCGCCAAGCTATAG
Done.