Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015876.1 Corchorus capsularis cultivar CVL-1 contig15897, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10881
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29


Found at i:212 original size:10 final size:10

Alignment explanation


    Indices: 197--229  Score: 66
    Period size: 10  Copynumber: 3.3  Consensus size: 10

        187 ATCAGGCTCG

                      
        197 GCTTCCTTTT
          1 GCTTCCTTTT

                      
        207 GCTTCCTTTT
          1 GCTTCCTTTT

                      
        217 GCTTCCTTTT
          1 GCTTCCTTTT

               
        227 GCT
          1 GCT

        230 ACCAAACTCA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   23  1.00

ACGTcount: A:0.00, C:0.30, G:0.12, T:0.58


Consensus pattern (10 bp):   
GCTTCCTTTT

Found at i:4382 original size:6 final size:6

Alignment explanation


    Indices: 4373--4404  Score: 55
    Period size: 6  Copynumber: 5.3  Consensus size: 6

       4363 GATTTGAAAT

                 *                               
       4373 ACCCAT ACCCAA ACCCAA ACCCAA ACCCAA AC
          1 ACCCAA ACCCAA ACCCAA ACCCAA ACCCAA AC

       4405 TGTAGTTCTT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.47, C:0.50, G:0.00, T:0.03


Consensus pattern (6 bp):   
ACCCAA

Done.