Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015878.1 Corchorus capsularis cultivar CVL-1 contig15899, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67627

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8103--8198
38
2.5
38
79
3
111
50
5
20
23
1.69
8181--8249
32
2.2
32
84
5
86
47
7
24
20
1.75
8363--8439
32
2.4
32
91
0
118
46
3
28
20
1.68
8412--8522
40
2.8
40
87
5
161
53
3
20
22
1.61
8494--8523
16
1.9
15
93
6
51
56
6
20
16
1.62
8636--8942
7
43.6
7
70
12
182
56
1
23
17
1.51
8811--8918
51
2.2
49
85
6
146
53
2
25
18
1.58
8860--9021
35
4.6
35
86
4
193
53
2
25
18
1.57
9081--9227
22
6.8
22
75
7
122
51
4
21
21
1.66
9150--9213
15
4.3
15
71
11
51
57
3
20
18
1.53
9179--9254
35
2.1
37
87
4
111
50
5
23
21
1.69
9112--9317
21
10.1
20
74
14
122
49
5
22
21
1.71
9379--9457
27
3.0
27
82
12
85
62
1
22
13
1.39
17450--17500
21
2.4
21
87
9
68
72
1
21
3
1.11
22865--22899
10
3.4
11
88
11
56
68
5
17
8
1.35
23475--23559
16
5.4
16
77
8
93
8
16
37
37
1.79
23980--24013
17
2.1
16
88
5
50
55
0
0
44
0.99
24359--24477
16
7.5
15
76
15
89
8
20
40
31
1.82
24355--24462
32
3.4
31
82
10
112
9
19
38
32
1.83
24498--24533
15
2.4
16
90
9
58
0
13
58
27
1.36
24638--24677
19
2.2
18
86
4
53
30
20
5
45
1.72
29445--29614
88
1.9
87
97
1
322
21
22
24
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36353--36391
19
2.1
19
85
9
53
51
7
5
35
1.53
43573--44158
303
1.9
303
86
0
823
26
19
18
34
1.95
49838--49912
30
2.5
31
76
6
82
12
28
32
28
1.92
58431--59031
303
2.0
303
88
0
907
26
20
19
33
1.96
60279--60863
303
1.9
303
89
0
893
26
20
18
34
1.96
60850--60892
21
2.0
21
100
0
86
16
18
27
37
1.92
62924--62975
18
2.8
19
81
16
65
7
25
0
67
1.17
65128--65712
303
1.9
303
87
2
861
26
20
18
33
1.96

Tables:   1

The End!