Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015880.1 Corchorus capsularis cultivar CVL-1 contig15901, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37884

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1628--2234
303
2.0
303
87
1
885
27
21
17
33
1.96
5035--5640
303
2.0
302
88
0
908
27
19
19
33
1.96
9688--9914
113
2.0
113
97
0
427
32
15
11
40
1.83
11813--11866
28
2.0
27
81
3
63
3
22
3
70
1.19
12961--13014
2
27.5
2
96
3
101
0
51
0
48
1.00
16807--16852
15
3.0
15
80
20
51
0
50
0
50
1.00
17294--17338
20
2.2
20
84
7
56
26
6
31
35
1.82
17545--17584
20
2.0
21
85
5
55
22
12
7
57
1.60
21716--21757
22
1.9
22
95
0
75
26
16
14
42
1.86
23787--23822
18
2.1
18
89
5
56
30
0
2
66
1.06
27770--27802
2
16.5
2
93
0
57
54
0
0
45
0.99
30411--30577
48
3.5
48
86
4
246
33
20
26
19
1.97
30549--31253
48
14.7
48
83
4
789
39
23
23
12
1.89
30559--31253
96
7.2
96
86
2
912
39
24
24
12
1.89
31815--31882
34
2.0
34
88
0
100
35
11
5
47
1.65
31849--32118
50
5.3
50
78
2
209
37
16
4
41
1.69
31860--32117
51
5.1
50
77
6
155
36
16
4
42
1.69
32025--32135
50
2.2
50
95
1
197
35
15
4
45
1.66
35549--35633
36
2.4
35
84
7
100
3
32
47
16
1.64

Tables:   1

The End!