genome.fa.s15887.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015887.1 Corchorus capsularis cultivar CVL-1 contig15908, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41635

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13878--13979	37	2.8	36	85	5	109	31	15	19	33	1.93
14630--14675	24	2.0	22	83	8	56	13	19	13	54	1.71
16288--16849	279	2.0	280	97	0	1063	38	18	12	30	1.88
16973--17018	14	3.3	14	77	20	51	78	0	15	6	0.95
17092--17130	14	2.7	15	84	15	55	46	7	12	33	1.71
27687--27726	21	2.0	20	85	5	53	25	15	17	42	1.88
28474--28581	53	2.0	53	85	3	146	29	25	0	44	1.54
28416--28602	8	24.0	8	70	11	120	27	24	1	46	1.59
28990--29035	8	5.8	8	84	0	65	28	30	2	39	1.69
28989--29045	24	2.3	26	84	9	82	28	28	3	40	1.73
29088--29576	22	22.6	21	70	17	185	28	21	5	44	1.74
29391--29424	16	2.1	16	88	0	50	29	20	8	41	1.82
29303--29489	58	3.2	57	82	8	218	27	22	5	44	1.74
29511--29581	8	10.0	7	75	23	53	29	15	4	50	1.63
29596--29646	22	2.3	22	82	0	57	27	17	1	52	1.55
29641--29745	22	4.7	22	76	15	74	30	20	5	42	1.75
29611--29765	30	5.2	30	74	12	104	30	20	4	44	1.71
29671--29782	58	1.9	58	87	3	163	30	19	6	43	1.76
31562--31619	16	3.5	17	79	9	57	22	17	3	56	1.55
31596--31721	49	2.5	50	79	6	139	19	18	5	56	1.61
31596--31721	25	5.1	24	77	11	128	19	18	5	56	1.61
31700--31744	21	2.1	21	83	0	54	26	22	2	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31727--32369	7	88.7	7	69	10	280	18	23	2	54	1.57
31727--32490	14	54.1	14	66	18	180	19	22	2	54	1.57
31727--31834	36	2.7	41	73	19	109	21	22	1	54	1.54
31861--32386	35	14.8	35	82	9	554	18	23	3	55	1.57
31712--32322	254	2.4	254	95	0	1105	19	23	2	54	1.58
32278--32438	29	5.4	29	70	16	114	19	21	2	55	1.54
32502--32578	32	2.4	32	87	6	111	19	28	3	48	1.67
32694--32766	32	2.3	32	83	4	85	20	23	6	49	1.73
32743--32840	38	2.5	39	72	8	92	25	22	6	45	1.75

Tables:   1

The End!