Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015891.1 Corchorus capsularis cultivar CVL-1 contig15912, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28650

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
127--219
38
2.5
37
79
11
109
13
17
11
56
1.66
281--403
22
5.6
22
76
10
108
42
10
14
32
1.80
281--426
44
3.3
44
76
3
141
43
10
13
32
1.78
714--815
23
4.5
22
79
6
98
36
7
13
42
1.74
439--815
22
17.8
21
67
17
138
38
8
16
37
1.78
978--1026
22
2.2
22
82
7
64
53
2
12
32
1.50
1028--1084
22
2.6
22
80
5
62
38
10
12
38
1.77
1068--1175
40
2.7
39
87
7
146
47
8
10
34
1.68
1952--1986
12
2.9
12
86
0
52
8
34
2
54
1.46
5355--5386
2
16.0
2
100
0
64
50
0
0
50
1.00
5982--6025
16
2.6
18
78
10
56
9
54
4
31
1.52
12996--13065
30
2.4
30
85
2
88
20
30
12
37
1.90
12986--13065
29
2.7
29
82
1
88
18
27
13
40
1.89
19565--19602
19
2.0
19
90
10
60
15
7
28
47
1.74
24419--24490
28
2.6
28
93
0
126
23
23
19
33
1.97
25758--26122
49
7.6
49
83
6
302
30
16
28
24
1.97
25805--26128
98
3.4
94
86
6
456
30
16
28
24
1.97

Tables:   1

The End!