Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015895.1 Corchorus capsularis cultivar CVL-1 contig15916, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8192
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30


Found at i:1315 original size:10 final size:10

Alignment explanation


    Indices: 1300--1324  Score: 50
    Period size: 10  Copynumber: 2.5  Consensus size: 10

       1290 GAGGACTCTA

                      
       1300 GAATTTTCTG
          1 GAATTTTCTG

                      
       1310 GAATTTTCTG
          1 GAATTTTCTG

                 
       1320 GAATT
          1 GAATT

       1325 ATGCAGGAAC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   15  1.00

ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48


Consensus pattern (10 bp):   
GAATTTTCTG

Found at i:7447 original size:17 final size:17

Alignment explanation


    Indices: 7422--7463  Score: 50
    Period size: 17  Copynumber: 2.5  Consensus size: 17

       7412 CAGATGTTAT

                *             
       7422 CTAGCACCTCATGC-TAC
          1 CTAGTACCTCAT-CATAC

                             
       7439 CTAGTACCTCATCATAC
          1 CTAGTACCTCATCATAC

              *     
       7456 CTGGTACC
          1 CTAGTACC

       7464 ATGACATGGA


Statistics
Matches: 22,  Mismatches: 2, Indels: 2
        0.85            0.08        0.08

Matches are distributed among these distances:
  16    1  0.05
  17   21  0.95

ACGTcount: A:0.24, C:0.38, G:0.12, T:0.26


Consensus pattern (17 bp):   
CTAGTACCTCATCATAC
Done.