genome.fa.s15896.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015896.1 Corchorus capsularis cultivar CVL-1 contig15917, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55186

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3574--3609	19	1.9	18	88	5	54	41	2	22	33	1.68
6473--6524	26	2.0	26	100	0	104	38	15	34	11	1.83
6474--6532	26	2.3	26	93	0	100	40	16	32	10	1.82
9888--10013	26	4.7	27	80	12	154	56	5	21	16	1.61
9880--10012	27	5.0	28	78	12	147	55	6	20	18	1.63
9880--10013	53	2.5	53	90	4	209	55	5	20	17	1.63
10143--10256	35	3.3	34	82	6	131	57	1	21	19	1.50
10087--10256	35	5.1	34	73	13	122	56	2	20	20	1.55
10354--10409	20	2.8	20	76	10	60	50	7	21	21	1.72
10294--10572	22	13.4	22	72	14	202	54	3	20	21	1.60
10281--10538	42	6.2	41	78	13	212	55	3	20	20	1.58
10410--10565	83	1.9	82	85	7	217	55	2	19	21	1.55
10532--10607	35	2.2	35	83	9	93	57	3	22	15	1.54
10598--10655	27	2.1	29	83	6	75	53	3	24	18	1.60
10666--10778	57	2.0	57	81	6	131	52	5	19	23	1.66
10649--10734	22	4.0	22	73	11	88	54	6	16	22	1.65
10738--10778	22	1.9	22	85	5	57	51	4	19	24	1.66
12550--12602	27	2.0	27	100	0	106	18	18	22	39	1.92
12553--12622	27	2.7	27	88	4	99	17	14	22	45	1.84
16930--17029	36	2.6	38	85	7	141	44	10	17	29	1.81
24013--24039	6	4.5	6	100	0	54	29	0	14	55	1.40
27800--27886	42	2.0	43	86	6	124	8	48	27	16	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30210--30234	10	2.5	10	100	0	50	48	20	8	24	1.76
31187--31213	6	4.5	6	100	0	54	29	0	14	55	1.40
32219--32248	16	1.9	16	93	6	53	46	13	3	36	1.60
43483--43527	18	2.4	19	88	3	65	42	2	22	33	1.66
45237--45269	17	1.9	17	100	0	66	21	18	18	42	1.89
54384--54426	22	2.0	22	95	0	77	44	9	9	37	1.69

Tables:   1

The End!