genome.fa.s15898.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015898.1 Corchorus capsularis cultivar CVL-1 contig15919, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60107

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291--333	22	2.0	22	90	0	68	44	16	27	11	1.82
538--600	15	4.5	13	74	18	54	53	0	6	39	1.26
538--608	29	2.5	28	80	11	65	54	0	7	38	1.27
548--608	15	4.3	14	78	15	63	57	0	8	34	1.29
3669--3708	21	2.0	20	85	5	53	67	0	12	20	1.22
3700--3747	7	6.7	7	81	13	53	79	0	16	4	0.89
3826--3854	13	2.3	13	94	5	51	41	6	6	44	1.58
3804--3855	15	3.7	14	82	10	70	44	7	5	42	1.57
4191--4232	21	2.0	20	90	9	66	73	11	0	14	1.09
4171--4232	20	3.3	19	75	24	69	74	9	0	16	1.07
4503--4532	13	2.2	14	94	5	53	33	3	20	43	1.68
5869--5942	22	3.2	22	72	10	76	29	24	18	27	1.98
5879--5958	25	3.3	25	74	10	94	23	26	22	27	2.00
5852--5960	47	2.3	47	96	0	200	28	26	20	24	1.99
5891--5963	22	3.2	23	70	20	64	28	24	19	27	1.98
6082--6162	25	3.3	25	68	13	78	24	25	20	28	1.99
6055--6164	48	2.3	48	93	1	186	29	26	19	25	1.98
5791--6415	203	3.1	203	95	0	1106	28	21	18	31	1.97
6259--6367	47	2.3	47	93	0	182	27	24	21	26	1.99
6291--6365	25	3.1	25	69	18	77	24	22	24	29	1.99
7329--7357	12	2.3	13	94	5	51	82	0	6	10	0.83
9898--9940	22	2.0	22	95	0	77	44	9	9	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18820--18859	13	3.0	13	85	3	53	55	0	0	45	0.99
18828--18858	16	1.9	16	93	0	53	58	0	0	41	0.98
22430--22479	22	2.3	22	93	3	84	42	14	20	24	1.88
23021--23106	25	3.3	25	66	15	75	54	9	17	18	1.69
25144--25193	13	4.0	13	76	10	59	38	16	16	30	1.90
25146--25210	24	2.7	24	82	2	76	33	16	16	32	1.92
31741--31772	2	16.0	2	100	0	64	50	0	50	0	1.00
33475--33563	43	2.1	43	97	0	169	20	14	6	58	1.59
38717--39037	151	2.1	153	82	3	380	37	15	13	33	1.87
41659--41698	19	2.1	19	100	0	80	40	25	10	25	1.86
41745--41769	11	2.3	11	100	0	50	48	20	8	24	1.76
42747--42789	21	2.0	21	90	0	68	32	11	20	34	1.89
43227--43315	43	2.1	43	93	0	151	19	13	6	60	1.55
44492--44539	22	2.4	20	83	16	64	60	2	33	4	1.27
44494--44539	20	2.3	21	82	17	62	60	2	32	4	1.28
44760--44816	30	1.9	29	82	10	71	43	19	17	19	1.88
48929--49000	31	2.3	33	74	13	80	59	9	4	26	1.47
49226--49256	2	15.5	2	100	0	62	48	0	0	51	1.00
55293--55324	6	5.3	6	100	0	64	84	0	0	15	0.63
55454--55584	62	2.1	61	81	4	147	48	16	13	22	1.81
57980--58017	18	2.1	18	100	0	76	44	23	10	21	1.83
59476--59515	16	2.6	16	88	4	55	2	20	42	35	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59665--59728	8	7.4	9	70	22	57	56	3	0	40	1.15
59980--60051	31	2.3	33	76	13	89	61	8	4	26	1.43

Tables:   1

The End!