genome.fa.s15900.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015900.1 Corchorus capsularis cultivar CVL-1 contig15921, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69483

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1352--1383	3	10.3	3	93	6	55	65	0	34	0	0.93
8708--8750	1	43.0	1	100	0	86	100	0	0	0	0.00
10211--10241	1	31.0	1	100	0	62	100	0	0	0	0.00
10745--10769	2	12.5	2	100	0	50	52	0	48	0	1.00
15211--15485	109	2.5	109	92	4	446	49	1	10	38	1.48
15788--15847	16	3.8	16	89	8	79	40	41	13	5	1.66
17268--17308	15	2.6	16	88	3	57	46	39	4	9	1.58
20703--20728	12	2.2	12	100	0	52	57	0	15	26	1.38
22150--22174	2	12.5	2	100	0	50	48	0	0	52	1.00
23381--23851	236	2.0	236	99	0	924	25	21	23	28	1.99
26015--26046	13	2.5	13	100	0	64	21	12	9	56	1.64
26230--26431	102	2.0	101	95	0	359	22	36	21	19	1.95
29471--29535	32	2.1	32	97	2	123	43	27	0	29	1.56
31480--31529	24	2.1	24	100	0	100	24	16	16	44	1.86
31588--31638	24	2.1	24	92	0	84	13	33	19	33	1.91
31620--31675	24	2.3	24	100	0	112	12	28	23	35	1.91
33338--33366	15	1.9	15	100	0	58	41	0	0	58	0.98
34089--34123	18	1.9	18	94	0	61	20	25	11	42	1.85
42405--42533	59	2.2	59	94	0	222	37	13	1	47	1.52
43523--43557	17	2.1	17	88	0	52	42	5	8	42	1.59
46102--46145	23	1.9	23	90	0	70	11	25	40	22	1.87
46107--46183	33	2.3	33	88	4	111	10	25	44	19	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46129--46236	33	3.3	33	85	2	128	10	26	40	22	1.85
49229--49264	19	1.9	18	88	5	54	41	2	22	33	1.68
59122--59157	19	1.9	18	88	5	54	41	2	22	33	1.68
63354--63405	10	4.8	10	80	15	59	13	48	26	11	1.77
64069--64115	24	2.0	25	87	8	71	21	4	19	55	1.60
65897--65929	13	2.5	13	95	0	57	18	12	9	60	1.57

Tables:   1

The End!