Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015902.1 Corchorus capsularis cultivar CVL-1 contig15923, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64264

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
494--524
15
2.1
15
93
0
53
51
25
0
22
1.48
2599--2664
29
2.2
30
78
10
73
54
16
16
12
1.71
4904--5012
36
3.0
37
93
2
184
32
15
18
33
1.92
5691--5720
15
2.0
15
93
0
51
13
10
10
66
1.44
8317--8361
3
15.7
3
86
4
58
68
0
2
28
1.01
9224--9250
13
2.1
13
100
0
54
51
14
7
25
1.68
9533--9718
88
2.0
92
87
7
254
42
11
17
28
1.84
9549--9737
88
2.1
92
80
6
206
44
10
18
26
1.82
10459--10511
23
2.3
23
87
6
72
66
3
28
1
1.20
13650--13708
30
2.0
30
100
0
118
25
20
6
47
1.74
17200--17360
87
1.9
85
87
5
234
42
6
16
34
1.73
28476--28540
26
2.4
27
82
2
78
70
3
18
7
1.24
29888--30422
54
9.9
53
82
6
503
29
21
20
29
1.98
30393--30492
35
2.9
35
96
0
182
30
14
19
37
1.90
31191--31229
17
2.3
17
91
8
62
28
0
0
71
0.86
31598--31759
87
1.9
85
82
7
202
43
4
17
33
1.70
36955--37296
163
2.1
166
90
3
530
32
11
19
37
1.87
39916--40169
129
1.9
131
82
2
314
37
15
16
30
1.90
39916--40176
131
2.0
131
81
3
310
37
15
15
31
1.89
47057--47086
14
2.1
14
93
0
51
23
3
36
36
1.71
52361--52450
45
2.0
45
91
0
144
34
16
21
27
1.95
52504--52833
166
2.0
167
84
3
434
29
14
16
40
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53402--53427
13
2.0
13
100
0
52
7
30
0
61
1.24
55102--55187
41
2.1
41
97
0
163
46
19
9
24
1.79
55929--55983
28
2.0
27
92
3
92
36
20
12
30
1.90
59466--59837
87
4.3
87
88
1
539
35
17
24
22
1.95
59466--59891
87
4.9
87
83
3
295
36
16
24
22
1.94
61324--61366
2
21.5
2
100
0
86
48
0
0
51
1.00
63120--63153
2
16.0
2
88
11
50
47
5
0
47
1.26
63440--63477
11
3.5
11
85
10
51
57
2
0
39
1.12
63666--63705
17
2.3
17
86
4
53
15
22
0
62
1.32

Tables:   1

The End!