genome.fa.s15905.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015905.1 Corchorus capsularis cultivar CVL-1 contig15926, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118342

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2398--2457	31	1.9	31	86	0	84	51	8	16	23	1.71
2452--2501	23	2.1	24	85	3	66	60	8	14	18	1.58
2490--2539	19	2.5	20	80	6	66	48	6	20	26	1.72
2519--2563	14	3.3	14	81	3	56	48	8	22	20	1.76
2543--2634	27	3.4	27	89	0	148	54	3	23	18	1.58
2519--2648	54	2.4	53	75	8	154	53	5	21	19	1.64
2597--2668	34	2.1	33	82	10	83	58	4	22	15	1.54
2661--2705	14	3.4	14	80	17	51	51	0	28	20	1.48
2736--2868	22	5.9	22	81	7	124	54	6	18	20	1.65
2830--3041	54	3.9	54	84	6	268	52	6	16	25	1.67
3072--3119	23	2.1	23	84	7	62	60	2	18	18	1.46
3123--3176	22	2.5	22	82	14	58	57	7	12	22	1.60
3782--3842	24	2.3	26	81	16	81	31	0	31	37	1.58
10837--10863	3	9.0	3	100	0	54	0	0	33	66	0.92
11880--11905	2	13.0	2	100	0	52	50	0	0	50	1.00
30026--30050	12	2.1	12	100	0	50	32	8	16	44	1.76
32415--32517	54	1.9	54	81	0	125	31	31	17	20	1.96
32495--32561	27	2.5	27	85	0	80	35	38	8	16	1.80
34591--34645	13	4.2	13	84	9	76	67	3	0	29	1.08
34676--34757	32	2.5	31	84	5	92	14	35	40	9	1.79
34694--34779	32	2.7	32	83	7	95	12	38	39	9	1.76
34980--35019	20	2.0	20	90	0	62	27	20	2	50	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36499--36541	16	2.7	16	85	0	59	34	25	13	25	1.93
43848--43909	26	2.4	26	81	2	72	17	32	37	12	1.88
44380--44406	6	4.5	6	100	0	54	55	14	0	29	1.40
44403--44445	13	3.4	13	87	3	61	58	6	11	23	1.57
44403--44455	25	2.1	25	82	6	63	62	7	9	20	1.50
47324--47444	64	1.9	64	98	0	233	42	14	18	24	1.88
51255--51310	22	2.4	23	79	11	60	71	3	23	1	1.11
52063--52135	32	2.3	31	86	6	101	46	6	23	23	1.76
52244--52314	32	2.2	32	87	7	108	52	4	22	21	1.64
52288--52396	40	2.7	40	85	0	146	51	3	21	23	1.64
52455--52542	32	3.1	26	82	12	86	54	5	15	23	1.63
52440--52515	32	2.3	33	91	6	120	55	5	17	22	1.62
52496--52546	26	2.0	26	92	7	86	52	3	15	27	1.60
52551--52720	7	23.7	7	76	11	157	56	2	25	15	1.52
52561--52819	36	7.3	36	87	8	320	55	3	23	16	1.55
52786--53057	22	12.6	21	71	14	121	53	5	19	21	1.65
52778--52841	29	2.2	28	83	10	76	54	4	20	20	1.62
52786--52849	15	4.4	14	75	16	67	56	4	17	21	1.59
52837--52941	28	3.5	28	66	22	77	53	5	18	22	1.65
52786--53217	43	10.3	43	69	21	212	52	6	19	21	1.67
52786--52883	15	6.7	15	65	26	50	55	5	17	22	1.62
52825--53134	64	4.9	64	78	13	297	52	6	19	21	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52992--53057	15	4.5	15	72	24	59	57	3	18	21	1.53
52852--53062	22	9.8	22	75	12	179	52	6	19	21	1.67
53014--53092	35	2.2	36	93	4	133	51	5	21	21	1.66
53014--53105	36	2.5	35	89	5	121	53	5	20	20	1.65
53051--53134	22	3.9	21	77	11	82	51	7	19	22	1.71
53198--53282	17	5.1	17	69	22	72	61	3	17	17	1.49
55906--56029	59	2.1	59	83	2	153	28	31	31	8	1.87
56077--56180	28	3.6	28	89	3	154	20	35	33	10	1.87
56077--56264	27	6.6	30	84	5	155	19	34	34	11	1.88
57188--57257	16	4.5	16	83	5	90	31	27	14	27	1.95
57871--57912	3	14.0	3	100	0	84	33	0	0	66	0.92
58050--58075	13	2.0	13	100	0	52	53	0	0	46	1.00
74106--74133	11	2.5	11	100	0	56	82	0	17	0	0.68
78017--78060	5	9.0	5	87	12	65	40	0	0	59	0.98
78658--78689	14	2.4	13	90	10	55	59	25	9	6	1.52
90958--90984	6	4.5	6	100	0	54	55	14	0	29	1.40
90981--91014	12	2.7	13	90	4	52	58	8	11	20	1.59
112173--112205	15	2.2	15	100	0	66	63	24	0	12	1.28

Tables:   1

The End!