Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015907.1 Corchorus capsularis cultivar CVL-1 contig15928, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4753
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33

Warning! 2 characters in sequence are not A, C, G, or T


Found at i:32 original size:12 final size:11

Alignment explanation


    Indices: 3--43  Score: 57
    Period size: 12  Copynumber: 3.6  Consensus size: 11

          1 TN

                       
          3 TTCTTTT-CTT
          1 TTCTTTTCCTT

                       
         13 TTCTTTTCCTT
          1 TTCTTTTCCTT

                         
         24 TTACTTTTCCCTT
          1 TT-CTTTT-CCTT

                   
         37 TTCTTTT
          1 TTCTTTT

         44 TGGGCTTTGC


Statistics
Matches: 28,  Mismatches: 0, Indels: 4
        0.88            0.00        0.12

Matches are distributed among these distances:
  10    7  0.25
  11    5  0.18
  12   10  0.36
  13    6  0.21

ACGTcount: A:0.02, C:0.24, G:0.00, T:0.73


Consensus pattern (11 bp):   
TTCTTTTCCTT

Found at i:3709 original size:13 final size:13

Alignment explanation


    Indices: 3691--3717  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

       3681 TTAATTATTG

                         
       3691 TTTGCTTTATTAA
          1 TTTGCTTTATTAA

                         
       3704 TTTGCTTTATTAA
          1 TTTGCTTTATTAA

             
       3717 T
          1 T

       3718 CTACTTTAGA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.22, C:0.07, G:0.07, T:0.63


Consensus pattern (13 bp):   
TTTGCTTTATTAA
Done.