genome.fa.s15908.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015908.1 Corchorus capsularis cultivar CVL-1 contig15929, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89562

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
760--827	6	11.3	6	83	10	61	2	26	0	70	1.01
779--815	5	7.0	5	90	6	56	2	21	0	75	0.92
2302--2363	26	2.3	27	75	8	65	61	12	11	14	1.57
6118--6194	36	2.1	36	100	0	154	28	18	28	24	1.98
10683--10893	110	1.9	110	93	0	359	48	14	7	29	1.71
12017--12048	14	2.3	14	100	0	64	50	9	6	34	1.60
11999--12069	34	2.1	34	84	5	90	49	11	8	30	1.68
12959--13027	33	2.1	33	100	0	138	52	2	18	26	1.60
12961--13015	17	3.3	17	74	5	67	54	3	18	23	1.59
14940--14985	20	2.4	19	85	3	56	47	4	15	32	1.65
14940--14991	19	2.7	19	84	3	59	48	5	13	32	1.66
17084--17327	126	1.9	126	93	1	418	15	12	13	57	1.66
17691--17721	15	2.1	15	93	0	53	41	0	6	51	1.27
26091--26132	20	2.1	21	91	8	70	59	7	4	28	1.44
41029--41099	31	2.3	31	85	4	90	21	22	14	42	1.88
42237--42280	2	23.0	2	86	9	65	47	2	0	50	1.13
43776--43826	22	2.3	22	83	6	59	41	17	9	31	1.82
43840--43964	22	5.7	22	75	9	112	40	16	11	32	1.83
43769--43906	72	1.9	72	83	5	181	39	15	10	34	1.82
43842--43968	44	3.0	42	73	13	132	40	16	10	32	1.82
44102--44295	22	8.8	22	68	9	83	31	17	9	41	1.82
46861--46893	16	2.0	17	88	5	50	66	0	12	21	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54139--54176	17	2.2	18	90	4	60	73	0	0	26	0.83
54246--54352	31	3.5	30	83	5	126	36	14	29	19	1.91
54994--55047	27	2.0	27	96	0	99	18	27	11	42	1.84
59073--59133	30	2.0	30	83	0	77	16	21	18	44	1.87
63893--63961	25	2.8	25	95	0	129	39	20	8	31	1.83
69127--69243	35	3.4	34	89	3	180	53	8	15	22	1.68
73631--73689	29	2.0	30	83	3	75	37	18	1	42	1.61
75594--75618	2	12.5	2	100	0	50	52	0	0	48	1.00
79081--79114	2	17.0	2	100	0	68	50	0	0	50	1.00
82674--82730	29	2.0	29	96	0	105	26	0	24	49	1.51
82739--83247	253	2.0	254	98	1	977	30	12	11	45	1.77
85201--85279	37	2.1	37	97	0	149	34	10	3	51	1.53
88438--88483	24	1.9	24	81	0	56	21	10	15	52	1.73
88646--88688	13	3.2	14	83	9	63	27	0	4	67	1.10
89378--89562	49	3.8	49	77	5	196	34	15	27	22	1.94

Tables:   1

The End!