Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015909.1 Corchorus capsularis cultivar CVL-1 contig15930, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58759

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1803--1839
13
2.8
14
84
8
51
32
0
8
59
1.27
6345--6402
2
31.5
2
74
22
56
55
1
0
43
1.10
6345--6404
11
5.6
11
76
20
65
55
1
0
43
1.10
17030--17119
45
2.0
45
91
0
144
33
17
22
26
1.96
25508--25761
116
2.2
114
87
2
373
26
19
6
47
1.74
25650--25742
19
4.9
18
70
13
71
30
19
7
43
1.78
25508--25749
57
4.2
57
88
2
349
26
18
7
47
1.74
25747--25860
9
12.7
9
87
3
167
13
29
0
57
1.37
25863--25917
17
3.4
17
75
10
69
16
23
7
52
1.68
25847--26197
64
5.2
64
75
11
310
16
24
3
55
1.57
25847--26197
32
10.5
32
72
11
222
16
24
3
55
1.57
26072--26127
16
3.5
16
76
9
60
17
25
3
53
1.60
25967--26259
139
2.1
136
84
10
373
16
24
3
54
1.58
26147--26179
14
2.3
15
94
5
59
15
33
0
51
1.43
26244--26438
57
3.4
57
82
9
238
23
19
5
51
1.66
39139--39188
23
2.4
22
87
12
70
40
2
4
54
1.31
44469--44537
26
2.7
26
90
2
104
34
8
15
40
1.79
44529--44687
22
7.3
21
76
11
108
34
15
10
38
1.82
44541--44687
44
3.3
45
79
10
135
36
16
10
36
1.84
44529--44686
66
2.4
66
80
7
162
34
15
10
39
1.83
44851--45011
22
7.3
22
75
2
144
37
9
16
36
1.81
44851--45011
87
1.8
88
82
2
207
37
9
16
36
1.81

Tables:   1

The End!