Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015911.1 Corchorus capsularis cultivar CVL-1 contig15932, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24424

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1960--2008
22
2.2
22
89
7
73
59
8
8
24
1.54
2044--2190
43
3.4
42
74
10
118
43
10
11
34
1.76
2087--2164
22
3.5
22
81
6
95
39
8
14
37
1.77
2154--2254
22
4.7
21
70
18
57
39
12
13
33
1.83
2198--2254
22
2.6
22
85
0
78
36
12
14
36
1.83
3056--3082
1
27.0
1
100
0
54
0
0
0
100
0.00
3746--4076
166
2.0
166
85
3
452
39
15
14
30
1.87
11474--11881
66
6.2
65
90
2
636
26
17
20
35
1.95
11474--11882
132
3.1
132
97
0
764
26
17
20
35
1.95
11771--11873
32
3.2
32
62
20
77
25
18
18
37
1.93
17430--17461
12
2.7
12
95
0
55
31
18
3
46
1.65
22186--22236
24
2.1
24
85
0
66
25
37
21
15
1.93
22439--22483
22
2.2
22
84
11
60
42
4
15
37
1.67
22792--23050
133
2.0
132
88
5
389
44
13
18
24
1.85

Tables:   1

The End!