Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015913.1 Corchorus capsularis cultivar CVL-1 contig15934, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8346

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3030--3166
38
3.6
38
88
2
186
54
5
13
27
1.59
3066--3129
19
3.4
19
70
8
67
56
3
12
28
1.51
3030--3188
76
2.1
78
85
5
216
54
5
13
26
1.60
3030--3199
38
4.4
39
82
8
154
53
5
14
27
1.62
3207--3496
56
5.2
56
97
0
537
38
4
16
39
1.70
3340--3658
91
3.5
88
77
8
327
38
6
16
38
1.74
3433--3513
21
4.2
21
68
20
59
40
4
16
38
1.70
3459--3515
17
3.3
17
72
13
62
35
7
15
42
1.75
3487--3595
56
2.0
55
83
1
137
39
5
17
37
1.73
3543--3659
35
3.4
34
84
3
144
40
7
15
36
1.76
3599--3674
35
2.2
35
88
4
109
38
9
15
36
1.80
4523--4680
37
4.2
37
79
4
174
44
16
15
22
1.85
4571--4620
24
2.0
27
84
11
70
44
18
18
20
1.88
4519--4680
75
2.2
74
82
3
191
45
16
16
22
1.85
5421--5593
87
2.0
87
86
4
242
27
24
11
36
1.90
5716--5765
5
9.6
5
80
8
55
2
14
0
84
0.72
5709--5765
20
2.7
21
78
8
53
3
14
1
80
0.92
5716--5765
15
3.2
15
85
5
64
2
14
0
84
0.72
5716--5766
21
2.4
23
81
15
65
3
13
0
82
0.81

Tables:   1

The End!