Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015915.1 Corchorus capsularis cultivar CVL-1 contig15936, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21320

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
487--561
27
2.8
26
81
2
87
41
25
16
17
1.89
1104--1128
10
2.5
10
100
0
50
24
8
20
48
1.76
4476--4555
24
3.2
25
72
15
67
18
26
2
52
1.58
4714--4781
26
2.6
27
81
6
68
26
20
4
48
1.68
4868--4976
40
2.7
40
94
2
184
19
24
5
50
1.68
5059--5104
23
2.0
24
95
4
85
17
26
4
52
1.63
5084--5114
16
1.9
16
100
0
62
19
22
6
51
1.69
5062--5112
23
2.2
22
83
13
59
19
23
5
50
1.69
8134--8168
15
2.3
15
90
9
54
17
2
5
74
1.14
8601--8813
64
3.3
64
88
1
309
23
24
14
36
1.93
13179--13233
27
2.0
27
89
0
83
58
7
21
12
1.59
14319--14343
13
1.9
13
100
0
50
48
8
16
28
1.74
15741--15789
21
2.3
21
80
16
57
32
14
12
40
1.83
15887--15933
13
3.3
14
82
11
51
6
17
2
74
1.12
18059--18084
2
13.0
2
100
0
52
50
0
50
0
1.00
19496--19537
10
3.9
11
78
15
52
26
7
2
64
1.32

Tables:   1

The End!