Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01015917.1 Corchorus capsularis cultivar CVL-1 contig15938, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 46451
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.32
Found at i:2976 original size:13 final size:12
Alignment explanation
Indices: 2953--2977 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2943 CAATAAAATG
2953 TGTTTTCAAAAA
1 TGTTTTCAAAAA
2965 TGTTTTCAAAAA
1 TGTTTTCAAAAA
2977 T
1 T
2978 CATGTTCTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.08, T:0.44
Consensus pattern (12 bp):
TGTTTTCAAAAA
Found at i:3691 original size:25 final size:24
Alignment explanation
Indices: 3663--3721 Score: 84
Period size: 25 Copynumber: 2.5 Consensus size: 24
3653 TTCAAACCTT
*
3663 AAACTTCATTTCTAACAACTTCTTC
1 AAACTTCATTTCTAACAAATT-TTC
*
3688 AAACTTAATTTCTAACAAATTTTC
1 AAACTTCATTTCTAACAAATTTTC
3712 AAAC-TCATTT
1 AAACTTCATTT
3722 TCCTTCATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
23 5 0.16
24 7 0.23
25 19 0.61
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (24 bp):
AAACTTCATTTCTAACAAATTTTC
Found at i:6214 original size:22 final size:22
Alignment explanation
Indices: 6188--6247 Score: 86
Period size: 22 Copynumber: 2.7 Consensus size: 22
6178 ATGGGGTAAT
* *
6188 CAAAATCTCATAGGGAGGTTATA
1 CAAAATTTCATAGGGAAGTTA-A
6211 -AAAATTTCATAGGGAAGTTAA
1 CAAAATTTCATAGGGAAGTTAA
6232 CAAAATTTCATAGGGA
1 CAAAATTTCATAGGGA
6248 TTTTATAGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 1 0.03
22 33 0.97
ACGTcount: A:0.43, C:0.10, G:0.20, T:0.27
Consensus pattern (22 bp):
CAAAATTTCATAGGGAAGTTAA
Found at i:6386 original size:22 final size:22
Alignment explanation
Indices: 6361--6589 Score: 126
Period size: 22 Copynumber: 10.5 Consensus size: 22
6351 GTTTAGCAAC
6361 ATTTCATAGGGATGTTATCAAA
1 ATTTCATAGGGATGTTATCAAA
**
6383 ATTTCATAATG-TGGTTATCAAA
1 ATTTCATAGGGAT-GTTATCAAA
** * *
6405 ATTTCATAGATAGGTTAACAAA
1 ATTTCATAGGGATGTTATCAAA
* * * * * *
6427 ACTCCAGATGGAGGTTAACAAA
1 ATTTCATAGGGATGTTATCAAA
* *
6449 ATTTCATAGGGATGCTCTCAAA
1 ATTTCATAGGGATGTTATCAAA
* *
6471 ATTCCATAGGGA-GATTCTCAAA
1 ATTTCATAGGGATG-TTATCAAA
* * *
6493 ATTACATA-GTATCATTATCAAA
1 ATTTCATAGGGAT-GTTATCAAA
* * *
6515 ATTTCATAGGAAGGTTATCAAT
1 ATTTCATAGGGATGTTATCAAA
* *
6537 ATTTCATA-TG-TGATCATCAAA
1 ATTTCATAGGGATG-TTATCAAA
* * * *
6558 ATTTCATAAGGAGGTTATTACA
1 ATTTCATAGGGATGTTATCAAA
*
6580 ATTTTATAGG
1 ATTTCATAGG
6590 CTTATTGCAA
Statistics
Matches: 154, Mismatches: 44, Indels: 18
0.71 0.20 0.08
Matches are distributed among these distances:
20 1 0.01
21 18 0.12
22 132 0.86
23 3 0.02
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (22 bp):
ATTTCATAGGGATGTTATCAAA
Found at i:6409 original size:44 final size:44
Alignment explanation
Indices: 6361--6589 Score: 169
Period size: 44 Copynumber: 5.2 Consensus size: 44
6351 GTTTAGCAAC
* *
6361 ATTTCATAGGGATGTTATCAAAATTTCATAATGTGGTTATCAAA
1 ATTTCATAGGGATGTTATCAAAATTTCATAAGGAGGTTATCAAA
** * * * * * * *
6405 ATTTCATAGATAGGTTAACAAAACTCCAGATGGAGGTTAACAAA
1 ATTTCATAGGGATGTTATCAAAATTTCATAAGGAGGTTATCAAA
* * * * * *
6449 ATTTCATAGGGATGCTCTCAAAATTCCATAGGGAGATTCTCAAA
1 ATTTCATAGGGATGTTATCAAAATTTCATAAGGAGGTTATCAAA
* * * *
6493 ATTACATA-GTATCATTATCAAAATTTCAT-AGGAAGGTTATCAAT
1 ATTTCATAGGGAT-GTTATCAAAATTTCATAAGG-AGGTTATCAAA
* * * *
6537 ATTTCATA-TG-TGATCATCAAAATTTCATAAGGAGGTTATTACA
1 ATTTCATAGGGATG-TTATCAAAATTTCATAAGGAGGTTATCAAA
*
6580 ATTTTATAGG
1 ATTTCATAGG
6590 CTTATTGCAA
Statistics
Matches: 137, Mismatches: 43, Indels: 10
0.72 0.23 0.05
Matches are distributed among these distances:
43 35 0.26
44 102 0.74
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.34
Consensus pattern (44 bp):
ATTTCATAGGGATGTTATCAAAATTTCATAAGGAGGTTATCAAA
Found at i:7167 original size:16 final size:16
Alignment explanation
Indices: 7116--7265 Score: 101
Period size: 16 Copynumber: 9.4 Consensus size: 16
7106 AAAAGTAAAC
**
7116 GACCCG-AACCCGCCT
1 GACCCGAAACCCGAAT
* *
7131 GACCCGAGACCCG-AG
1 GACCCGAAACCCGAAT
**
7146 GAACCCGTGACCCGAAT
1 G-ACCCGAAACCCGAAT
*
7163 GACCCGCAACCC-AGAT
1 GACCCGAAACCCGA-AT
* *
7179 GACCCGAGACACGAAT
1 GACCCGAAACCCGAAT
*
7195 GACCCGTAACCC-AGAT
1 GACCCGAAACCCGA-AT
7211 GACCCGAAACCCGAAT
1 GACCCGAAACCCGAAT
* ** *
7227 GACCCTAAACTTGTAT
1 GACCCGAAACCCGAAT
*
7243 GACTCGAAACCCGAAT
1 GACCCGAAACCCGAAT
*
7259 AACCCGA
1 GACCCGA
7266 GACATTAACC
Statistics
Matches: 103, Mismatches: 25, Indels: 13
0.73 0.18 0.09
Matches are distributed among these distances:
15 9 0.09
16 90 0.87
17 4 0.04
ACGTcount: A:0.32, C:0.37, G:0.21, T:0.10
Consensus pattern (16 bp):
GACCCGAAACCCGAAT
Found at i:7182 original size:48 final size:48
Alignment explanation
Indices: 7116--7231 Score: 123
Period size: 48 Copynumber: 2.4 Consensus size: 48
7106 AAAAGTAAAC
** * *
7116 GACCCG-AACCCGCCTGACCCGAGACCCG-AGGAACCCGTGACCC-GAAT
1 GACCCGAAACCCGAATGACCCGAGACACGAAGG-ACCCGTAACCCAG-AT
* *
7163 GACCCGCAACCC-AGATGACCCGAGACACGAATGACCCGTAACCCAGAT
1 GACCCGAAACCCGA-ATGACCCGAGACACGAAGGACCCGTAACCCAGAT
7211 GACCCGAAACCCGAATGACCC
1 GACCCGAAACCCGAATGACCC
7232 TAAACTTGTA
Statistics
Matches: 58, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
47 6 0.10
48 48 0.83
49 4 0.07
ACGTcount: A:0.30, C:0.41, G:0.22, T:0.07
Consensus pattern (48 bp):
GACCCGAAACCCGAATGACCCGAGACACGAAGGACCCGTAACCCAGAT
Found at i:7184 original size:32 final size:32
Alignment explanation
Indices: 7148--7231 Score: 132
Period size: 32 Copynumber: 2.6 Consensus size: 32
7138 GACCCGAGGA
*
7148 ACCCGTGACCCGAATGACCCGCAACCCAGATG
1 ACCCGAGACCCGAATGACCCGCAACCCAGATG
* *
7180 ACCCGAGACACGAATGACCCGTAACCCAGATG
1 ACCCGAGACCCGAATGACCCGCAACCCAGATG
*
7212 ACCCGAAACCCGAATGACCC
1 ACCCGAGACCCGAATGACCC
7232 TAAACTTGTA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.32, C:0.39, G:0.20, T:0.08
Consensus pattern (32 bp):
ACCCGAGACCCGAATGACCCGCAACCCAGATG
Found at i:7245 original size:32 final size:32
Alignment explanation
Indices: 7155--7264 Score: 123
Period size: 32 Copynumber: 3.4 Consensus size: 32
7145 GGAACCCGTG
* * *
7155 ACCCGAATGACCCGCAACCCAGATGACCCGAG
1 ACCCGAATGACCCGTAAACCAGATGACCCGAA
* *
7187 ACACGAATGACCCGTAACCCAGATGACCCGAA
1 ACCCGAATGACCCGTAAACCAGATGACCCGAA
** *
7219 ACCCGAATGACCC-TAAACTTGTATGACTCGAA
1 ACCCGAATGACCCGTAAACCAG-ATGACCCGAA
*
7251 ACCCGAATAACCCG
1 ACCCGAATGACCCG
7265 AGACATTAAC
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
31 5 0.07
32 62 0.93
ACGTcount: A:0.35, C:0.35, G:0.18, T:0.12
Consensus pattern (32 bp):
ACCCGAATGACCCGTAAACCAGATGACCCGAA
Found at i:7399 original size:21 final size:21
Alignment explanation
Indices: 7374--7421 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
7364 TACAATTTAT
7374 ATTATTGTTATAATTTTACCA
1 ATTATTGTTATAATTTTACCA
* *
7395 ATTATTGTTATGATTTTACCT
1 ATTATTGTTATAATTTTACCA
7416 ATTATT
1 ATTATT
7422 AATTGGCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.56
Consensus pattern (21 bp):
ATTATTGTTATAATTTTACCA
Found at i:8021 original size:33 final size:33
Alignment explanation
Indices: 7984--8053 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
7974 AAAAAACTTC
7984 TAGATCCGCCACTGCCAACAAATCCTCTTAGAG
1 TAGATCCGCCACTGCCAACAAATCCTCTTAGAG
8017 TAGATCCGCCACTGCCAACAAATCCTCTTAGAG
1 TAGATCCGCCACTGCCAACAAATCCTCTTAGAG
8050 TAGA
1 TAGA
8054 AGATGAAGTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.31, C:0.31, G:0.16, T:0.21
Consensus pattern (33 bp):
TAGATCCGCCACTGCCAACAAATCCTCTTAGAG
Found at i:11199 original size:10 final size:10
Alignment explanation
Indices: 11184--11215 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
11174 TTTACTCTAT
*
11184 TATTTTCATA
1 TATTTTTATA
11194 TATTTTTATA
1 TATTTTTATA
11204 TATTTTTATA
1 TATTTTTATA
11214 TA
1 TA
11216 AATATATTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (10 bp):
TATTTTTATA
Found at i:12062 original size:16 final size:16
Alignment explanation
Indices: 12043--12076 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
12033 ATTTATGATT
12043 TTATTTATTTTAGTAC
1 TTATTTATTTTAGTAC
12059 TTATTTATTTTAGTAC
1 TTATTTATTTTAGTAC
12075 TT
1 TT
12077 CTTATCGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.65
Consensus pattern (16 bp):
TTATTTATTTTAGTAC
Found at i:41921 original size:16 final size:16
Alignment explanation
Indices: 41858--41921 Score: 60
Period size: 16 Copynumber: 4.1 Consensus size: 16
41848 GGCAATCAAG
*
41858 AGAAATAATCAGTAAA
1 AGAAGTAATCAGTAAA
*
41874 GGAAGTAATCAGTAAA
1 AGAAGTAATCAGTAAA
* **
41890 AG--GGACAAAAGTAAA
1 AGAAGTA-ATCAGTAAA
41905 AGAAGTAATCAGTAAA
1 AGAAGTAATCAGTAAA
41921 A
1 A
41922 TGGTAATTAT
Statistics
Matches: 36, Mismatches: 9, Indels: 6
0.71 0.18 0.12
Matches are distributed among these distances:
14 2 0.06
15 9 0.25
16 23 0.64
17 2 0.06
ACGTcount: A:0.58, C:0.06, G:0.20, T:0.16
Consensus pattern (16 bp):
AGAAGTAATCAGTAAA
Found at i:42220 original size:20 final size:21
Alignment explanation
Indices: 42197--42239 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
42187 AATAGTAATC
* *
42197 AGTAAAAT-GTAATCGGTAAG
1 AGTAAAATAATAATCAGTAAG
42217 AGTAAAATAATAATCAGTAAG
1 AGTAAAATAATAATCAGTAAG
42238 AG
1 AG
42240 CAAAGTGGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.51, C:0.05, G:0.21, T:0.23
Consensus pattern (21 bp):
AGTAAAATAATAATCAGTAAG
Found at i:42234 original size:35 final size:33
Alignment explanation
Indices: 42187--42409 Score: 118
Period size: 35 Copynumber: 6.5 Consensus size: 33
42177 GTAATTGGAT
42187 AATAGTAATCAGTAAAATGTAATCGGTAAGAGTAA
1 AATAGTAATCAGTAAAA-GTAAT-GGTAAGAGTAA
* * * *
42222 AATAATAATCAGTAAGAGCAAAGTGGTAATAGTAA
1 AATAGTAATCAGTAAAAG-TAA-TGGTAAGAGTAA
* *
42257 AATAGTAATAAGTAAAAGGTAATTAGTAAGAGTAA
1 AATAGTAATCAGTAAAA-GTAA-TGGTAAGAGTAA
** * *
42292 AATAGTAAAGAGT--AAG--ATGATAAAAAGT-A
1 AATAGTAATCAGTAAAAGTAATGGT-AAGAGTAA
* *
42321 AAGAGTAATCAGTAAAGAGTAAAATGGTAAAAAGT-A
1 AATAGTAATCAGTAAA-AGT--AATGGT-AAGAGTAA
* *
42357 AAGAGTAATCAGTAAAAGAGTAAAATGGTAAAAGGT-A
1 AATAGTAATCAGT-AAA-AGT--AATGGTAAGA-GTAA
*
42394 AAGAGTAATCAGTAAA
1 AATAGTAATCAGTAAA
42410 GAGAAAAATG
Statistics
Matches: 155, Mismatches: 20, Indels: 25
0.77 0.10 0.12
Matches are distributed among these distances:
29 13 0.08
30 6 0.04
31 1 0.01
32 3 0.02
33 2 0.01
34 1 0.01
35 64 0.41
36 34 0.22
37 31 0.20
ACGTcount: A:0.54, C:0.03, G:0.21, T:0.22
Consensus pattern (33 bp):
AATAGTAATCAGTAAAAGTAATGGTAAGAGTAA
Found at i:42322 original size:7 final size:7
Alignment explanation
Indices: 42252--42401 Score: 68
Period size: 7 Copynumber: 20.7 Consensus size: 7
42242 AAGTGGTAAT
42252 AGTAAAA
1 AGTAAAA
*
42259 TAGTAATA
1 -AGTAAAA
42267 AGTAAAA
1 AGTAAAA
* **
42274 GGTAATT
1 AGTAAAA
*
42281 AGT-AAG
1 AGTAAAA
42287 AGTAAAA
1 AGTAAAA
*
42294 TAGTAAAG
1 -AGTAAAA
*
42302 AGTAAGA
1 AGTAAAA
*
42309 TGATAAAA
1 AG-TAAAA
*
42317 AGTAAAG
1 AGTAAAA
**
42324 AGTAATC
1 AGTAAAA
*
42331 AGTAAAG
1 AGTAAAA
42338 AGTAAAA
1 AGTAAAA
*
42345 TGGTAAAA
1 -AGTAAAA
*
42353 AGTAAAG
1 AGTAAAA
**
42360 AGTAATC
1 AGTAAAA
42367 AGTAAAA
1 AGTAAAA
42374 GAGTAAAA
1 -AGTAAAA
*
42382 TGGTAAAA
1 -AGTAAAA
* *
42390 GGTAAAG
1 AGTAAAA
42397 AGTAA
1 AGTAA
42402 TCAGTAAAGA
Statistics
Matches: 105, Mismatches: 32, Indels: 11
0.71 0.22 0.07
Matches are distributed among these distances:
6 4 0.04
7 65 0.62
8 36 0.34
ACGTcount: A:0.56, C:0.01, G:0.22, T:0.21
Consensus pattern (7 bp):
AGTAAAA
Found at i:42372 original size:29 final size:28
Alignment explanation
Indices: 42247--42381 Score: 98
Period size: 29 Copynumber: 4.7 Consensus size: 28
42237 GAGCAAAGTG
*
42247 GTAAT-AGTAAAATAGTAATAAGTAAA-A
1 GTAATGAGTAAAA-AGTAAAAAGTAAAGA
* *
42274 GGTAATTAGT-AAGAGTAAAATAGTAAAGA
1 -GTAATGAGTAAAAAGTAAAA-AGTAAAGA
* **
42303 GTAA-GATGATAAAAAGTAAAGAGTAATCA
1 GTAATGA-G-TAAAAAGTAAAAAGTAAAGA
* *
42332 GTAAAGAGTAAAATGGTAAAAAGTAAAGA
1 GTAATGAGTAAAA-AGTAAAAAGTAAAGA
*
42361 GTAATCAGTAAAAGAGTAAAA
1 GTAATGAGTAAAA-AGTAAAA
42382 TGGTAAAAGG
Statistics
Matches: 84, Mismatches: 15, Indels: 15
0.74 0.13 0.13
Matches are distributed among these distances:
27 7 0.08
28 23 0.27
29 44 0.52
30 10 0.12
ACGTcount: A:0.56, C:0.01, G:0.21, T:0.21
Consensus pattern (28 bp):
GTAATGAGTAAAAAGTAAAAAGTAAAGA
Found at i:42384 original size:37 final size:36
Alignment explanation
Indices: 42295--42426 Score: 210
Period size: 36 Copynumber: 3.6 Consensus size: 36
42285 AGAGTAAAAT
* *
42295 AGTAAAGAGTAAGATGATAAAAAGTAAAGAGTAATC
1 AGTAAAGAGTAAAATGGTAAAAAGTAAAGAGTAATC
42331 AGTAAAGAGTAAAATGGTAAAAAGTAAAGAGTAATC
1 AGTAAAGAGTAAAATGGTAAAAAGTAAAGAGTAATC
*
42367 AGTAAAAGAGTAAAATGGTAAAAGGTAAAGAGTAATC
1 AGT-AAAGAGTAAAATGGTAAAAAGTAAAGAGTAATC
* *
42404 AGTAAAGAGAAAAATGGCAAAAA
1 AGTAAAGAGTAAAATGGTAAAAA
42427 AAAAATATAT
Statistics
Matches: 89, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
36 54 0.61
37 35 0.39
ACGTcount: A:0.57, C:0.03, G:0.23, T:0.17
Consensus pattern (36 bp):
AGTAAAGAGTAAAATGGTAAAAAGTAAAGAGTAATC
Found at i:42540 original size:29 final size:30
Alignment explanation
Indices: 42492--42557 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 30
42482 GTAAATGGTA
* *
42492 AGTAAGAAAAGGATCAAAATGGTATTCAAT
1 AGTAAAAAAAGGATAAAAATGGTATTCAAT
*
42522 AGTAAAAAAAGG-TAAAAATGGTATTCAGT
1 AGTAAAAAAAGGATAAAAATGGTATTCAAT
*
42551 AGCAAAA
1 AGTAAAA
42558 GCAAAAAATG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 21 0.66
30 11 0.34
ACGTcount: A:0.53, C:0.06, G:0.20, T:0.21
Consensus pattern (30 bp):
AGTAAAAAAAGGATAAAAATGGTATTCAAT
Found at i:45291 original size:14 final size:13
Alignment explanation
Indices: 45274--45312 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
45264 CAAGAAATTG
45274 TTTTCAAGAAAAGA
1 TTTTCAA-AAAAGA
*
45288 TTTTCAAAAATGA
1 TTTTCAAAAAAGA
45301 GTTTTCAAAAAA
1 -TTTTCAAAAAA
45313 AAAACTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 5 0.23
14 17 0.77
ACGTcount: A:0.49, C:0.08, G:0.10, T:0.33
Consensus pattern (13 bp):
TTTTCAAAAAAGA
Found at i:45304 original size:28 final size:28
Alignment explanation
Indices: 45260--45313 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
45250 AAGAGACATT
* *
45260 TTTTCAAGAAATTGTTTTCAAGAAAAGA
1 TTTTCAAGAAATAGTTTTCAAAAAAAGA
45288 TTTTCAA-AAATGAGTTTTCAAAAAAA
1 TTTTCAAGAAAT-AGTTTTCAAAAAAA
45314 AAACTTTGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.35
Consensus pattern (28 bp):
TTTTCAAGAAATAGTTTTCAAAAAAAGA
Done.