genome.fa.s15921.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015921.1 Corchorus capsularis cultivar CVL-1 contig15942, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127491

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4449--4485	9	4.1	9	92	0	65	45	0	35	18	1.50
5863--5899	16	2.3	16	90	0	56	37	45	13	2	1.58
6654--6695	11	3.7	11	84	6	57	28	45	21	4	1.72
6654--6702	23	2.1	23	96	0	71	30	44	20	4	1.70
6654--6702	6	8.5	6	77	8	57	30	44	20	4	1.70
6669--6701	17	1.9	17	93	0	57	27	48	21	3	1.64
6694--6755	16	3.9	16	85	2	90	45	32	11	11	1.76
6691--6762	32	2.3	32	90	2	110	43	37	9	9	1.71
17970--18012	22	2.0	22	86	9	61	32	30	6	30	1.84
21966--22048	40	2.1	40	97	0	157	24	6	32	37	1.80
24201--25210	426	2.3	430	82	5	1205	30	13	13	41	1.83
25630--25732	23	4.5	23	92	2	163	27	41	16	14	1.87
25772--25893	26	4.7	26	84	8	149	27	40	15	17	1.89
27021--27141	42	2.9	41	83	4	161	38	28	23	9	1.86
27556--27727	90	1.9	90	92	0	290	25	32	26	15	1.95
27640--27871	125	1.8	126	87	2	342	29	28	28	13	1.94
28287--28407	21	5.6	21	66	14	66	42	19	21	16	1.88
28918--29265	57	6.1	57	87	3	421	44	16	20	17	1.87
29261--29682	44	9.6	44	90	0	666	45	24	14	16	1.84
29832--30010	58	3.1	58	93	0	304	48	15	22	14	1.81
31124--31236	45	2.6	45	94	2	194	41	20	17	20	1.90
31124--31252	45	2.9	44	86	8	149	41	20	20	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31246--31389	37	3.9	37	88	1	207	30	28	22	18	1.97
31246--31389	75	1.9	74	88	1	216	30	28	22	18	1.97
31438--31566	59	2.2	59	94	0	222	50	16	8	24	1.73
31915--31969	23	2.4	23	93	0	92	27	40	18	14	1.89
32009--32130	26	4.7	26	84	8	149	27	40	14	18	1.89
42847--42877	15	2.1	15	100	0	62	35	12	19	32	1.90
44452--44521	5	13.6	5	72	21	56	1	20	1	77	0.93
44449--44521	13	5.2	13	76	14	74	1	19	1	78	0.91
44465--44531	25	2.5	25	81	13	73	1	23	1	73	1.00
44451--44509	6	9.8	6	75	14	50	1	18	1	77	0.93
45983--46018	17	2.1	18	94	5	65	69	0	0	30	0.89
45974--46021	17	2.4	21	67	29	50	68	0	0	31	0.90
46048--46181	66	2.0	66	98	0	259	37	15	23	23	1.93
52825--52884	21	2.8	20	72	18	50	40	11	8	40	1.72
59342--59436	36	3.0	30	70	16	82	27	18	29	24	1.98
63698--63732	17	2.0	18	88	5	54	62	17	8	11	1.52
76054--76102	21	2.3	21	82	6	55	14	28	16	40	1.87
80412--80447	18	2.1	17	89	5	54	11	19	8	61	1.54
81470--81504	17	2.0	18	94	5	63	22	5	14	57	1.59
86234--86285	27	1.9	27	96	0	95	17	15	21	46	1.84
90494--90523	15	1.9	16	93	6	53	53	10	3	33	1.51
93332--93935	48	13.8	45	72	12	279	16	26	19	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93439--93978	41	12.7	40	73	14	376	15	26	20	37	1.92
93484--93976	88	5.7	87	86	6	546	15	27	20	36	1.93
93480--93976	170	2.9	168	84	5	602	15	26	20	37	1.93
93992--94576	50	11.8	50	82	6	620	18	28	16	36	1.93
93992--94576	100	5.9	99	83	5	691	18	28	16	36	1.93
93992--94576	249	2.3	248	84	4	716	18	28	16	36	1.93
97374--97439	29	2.2	30	82	10	82	45	16	19	18	1.86
98592--98764	76	2.3	74	87	4	240	30	20	19	30	1.97
98592--98764	38	4.6	38	83	1	206	30	20	19	30	1.97
98799--98891	15	5.7	16	79	12	84	30	26	4	38	1.76
98799--99053	17	14.6	17	66	19	109	29	26	5	37	1.80
98917--99019	51	2.0	52	90	3	163	31	29	2	36	1.72
98956--99053	19	5.6	19	71	18	86	31	27	3	37	1.72
98952--99057	34	3.1	34	95	0	185	31	25	2	40	1.70
99494--99544	27	1.9	27	96	4	95	17	13	23	45	1.84
99997--100027	12	2.6	12	94	0	53	16	19	6	58	1.59
102687--102819	48	2.8	47	88	7	189	18	26	16	38	1.92
102800--103279	41	11.6	40	71	10	297	15	26	20	37	1.93
102736--103163	166	2.5	169	83	4	517	16	25	19	38	1.92
102745--103277	169	3.2	168	81	6	474	16	26	19	37	1.93
102952--103277	81	3.9	81	76	10	293	15	26	20	37	1.93
103292--103726	50	8.8	50	85	3	504	18	28	16	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103290--103726	149	2.9	146	81	6	497	18	28	16	36	1.92
104590--104625	18	2.1	17	89	5	54	11	13	8	66	1.44
106502--106537	18	2.0	18	100	0	72	33	38	5	22	1.77
107857--107980	65	1.9	65	96	0	230	25	19	20	33	1.96
113885--113909	12	2.1	12	100	0	50	60	16	0	24	1.36
117552--117609	21	2.8	21	76	5	64	51	10	8	29	1.65
120444--120534	32	2.9	32	81	4	105	40	35	7	16	1.77
121629--121669	21	2.0	21	95	0	73	43	39	0	17	1.49
127455--127491	2	19.0	2	88	5	58	45	0	0	54	1.00

Tables:   1

The End!