Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015927.1 Corchorus capsularis cultivar CVL-1 contig15948, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13541
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35


Found at i:2852 original size:29 final size:29

Alignment explanation


    Indices: 2810--2868  Score: 118
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       2800 CCATCCCAGT

                                         
       2810 TTGAGCCTTTTCGATTGTCATATTTGTTG
          1 TTGAGCCTTTTCGATTGTCATATTTGTTG

                                         
       2839 TTGAGCCTTTTCGATTGTCATATTTGTTG
          1 TTGAGCCTTTTCGATTGTCATATTTGTTG

             
       2868 T
          1 T

       2869 CCTACCAGAA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   30  1.00

ACGTcount: A:0.14, C:0.14, G:0.20, T:0.53


Consensus pattern (29 bp):   
TTGAGCCTTTTCGATTGTCATATTTGTTG
Done.