Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015931.1 Corchorus capsularis cultivar CVL-1 contig15952, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41735

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3580--3648
32
2.1
34
89
5
106
46
11
7
34
1.68
3705--3762
20
3.0
20
72
12
57
48
1
8
41
1.44
3693--3854
84
2.0
82
82
12
199
49
4
14
31
1.64
4894--4919
13
2.0
13
100
0
52
15
23
7
53
1.67
14459--14674
106
2.0
106
86
0
297
38
11
15
34
1.83
17086--17278
70
2.8
68
83
8
230
47
5
24
23
1.72
17086--17286
68
2.9
67
83
7
242
46
4
24
24
1.72
18541--18570
10
3.1
10
95
4
53
23
0
0
76
0.78
20108--20133
10
2.6
10
100
0
52
30
7
23
38
1.83
20608--20664
28
2.0
28
100
0
114
35
17
7
40
1.77
21350--21826
239
2.0
238
95
1
848
50
4
10
33
1.58
21400--21829
121
3.6
121
75
18
468
51
3
11
34
1.54
27621--27679
23
2.9
20
82
12
59
64
0
1
33
1.04
33902--33940
12
3.6
12
80
19
50
25
28
15
30
1.96
34051--34089
10
3.9
10
89
0
60
43
20
5
30
1.73
34051--34089
20
2.0
20
100
0
78
43
20
5
30
1.73
35102--35169
25
2.7
25
100
0
136
25
23
16
35
1.95
35102--35169
12
5.5
12
93
6
118
25
23
16
35
1.95

Tables:   1

The End!