genome.fa.s15933.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015933.1 Corchorus capsularis cultivar CVL-1 contig15954, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56968

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
898--973	27	2.9	26	74	14	75	3	7	14	73	1.20
914--970	22	2.5	23	77	5	62	5	7	14	73	1.21
898--962	32	2.0	32	82	11	80	4	9	13	72	1.26
6301--6327	14	1.9	14	100	0	54	0	25	0	74	0.83
10635--10781	37	4.0	36	83	3	168	42	27	14	15	1.87
10635--10781	74	2.0	74	84	5	190	42	27	14	15	1.87
11103--11148	15	3.1	16	81	12	53	63	4	4	28	1.33
11568--11610	13	3.2	14	83	9	54	60	4	0	34	1.17
12327--12372	23	2.0	23	100	0	92	21	13	21	43	1.86
15511--15559	14	3.6	14	71	18	50	44	2	0	53	1.12
15513--15567	25	2.2	25	100	0	110	43	3	0	52	1.18
18842--18888	24	2.0	24	86	0	67	27	21	27	23	1.99
18923--19157	89	2.6	89	82	1	283	30	19	18	31	1.96
19213--19330	32	3.7	31	85	4	155	23	18	24	33	1.97
20641--20769	64	2.0	64	100	0	258	30	15	17	37	1.90
21097--21155	11	5.4	11	83	0	73	27	33	10	28	1.89
21097--21164	22	3.1	22	84	0	73	25	35	10	29	1.89
21116--21164	11	4.5	11	84	0	53	26	34	10	28	1.89
21219--21244	12	2.2	12	100	0	52	23	34	0	42	1.54
26885--26919	11	3.2	11	91	0	52	28	31	11	28	1.92
50422--50826	30	13.6	30	88	1	503	32	19	19	29	1.96
55407--55550	66	2.2	66	91	6	231	36	5	6	51	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55506--55604	23	3.8	26	77	16	107	38	6	6	49	1.52
55556--55605	21	2.4	20	76	20	57	34	4	8	54	1.49

Tables:   1

The End!