Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015935.1 Corchorus capsularis cultivar CVL-1 contig15956, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34346

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
263--326
27
2.4
27
87
10
87
9
23
7
59
1.54
346--391
24
1.9
24
95
0
83
45
10
15
28
1.79
1422--1447
13
2.0
13
100
0
52
7
0
15
76
0.99
9775--9857
39
2.1
39
100
0
166
53
4
14
27
1.61
11038--11078
21
2.0
21
100
0
82
19
14
34
31
1.92
11231--11263
17
1.9
17
93
0
57
27
9
36
27
1.87
11619--11978
156
2.3
155
79
6
390
34
19
15
30
1.93
15633--15674
3
14.0
3
85
9
50
40
0
0
59
0.97
21421--22038
33
18.1
35
69
13
189
31
15
10
42
1.81
21427--21612
68
2.7
69
83
4
216
32
16
8
41
1.79
21563--21806
69
3.5
68
76
6
177
29
14
13
43
1.83
21563--21806
68
3.5
69
76
6
181
29
14
13
43
1.83
21740--21936
100
2.0
100
82
2
243
29
12
11
45
1.78
21841--22230
69
5.7
68
78
10
374
33
15
11
39
1.83
22012--22064
26
2.0
26
85
0
70
33
18
15
32
1.92
21908--22166
130
2.0
131
83
5
328
32
16
11
38
1.85
22343--22410
35
1.9
35
85
5
93
32
11
14
41
1.82

Tables:   1

The End!