Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001594.1 Corchorus capsularis cultivar CVL-1 contig01594, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1166
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35


Found at i:574 original size:21 final size:21

Alignment explanation


    Indices: 549--590  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        539 AGAATGATAA

                           *     
        549 CTTATTATATTAGATTATATT
          1 CTTATTATATTAGATAATATT

                                 
        570 CTTATTATATTAGATAATATT
          1 CTTATTATATTAGATAATATT

        591 AGAGTTAATT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.36, C:0.05, G:0.05, T:0.55


Consensus pattern (21 bp):   
CTTATTATATTAGATAATATT

Found at i:1062 original size:19 final size:19

Alignment explanation


    Indices: 1038--1075  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       1028 CATGTACCTT

                        *      
       1038 AGTAATTCAACATAACATA
          1 AGTAATTCAACAGAACATA

                               
       1057 AGTAATTCAACAGAACATA
          1 AGTAATTCAACAGAACATA

       1076 GATCCAAGAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.53, C:0.16, G:0.08, T:0.24


Consensus pattern (19 bp):   
AGTAATTCAACAGAACATA
Done.