Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015945.1 Corchorus capsularis cultivar CVL-1 contig15966, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 28505
ACGTcount: A:0.32, C:0.18, G:0.19, T:0.30


Found at i:8082 original size:21 final size:21

Alignment explanation


    Indices: 8056--8104  Score: 73
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       8046 GCACTGGAGT

                   *              
       8056 ACATGGGTCG-CAAGGCAAACC
          1 ACATGGGGCGCCAA-GCAAACC

                                 
       8077 ACATGGGGCGCCAAGCAAACC
          1 ACATGGGGCGCCAAGCAAACC

                   
       8098 ACATGGG
          1 ACATGGG

       8105 CGTCCAGCGC


Statistics
Matches: 26,  Mismatches: 1, Indels: 2
        0.90            0.03        0.07

Matches are distributed among these distances:
  21   23  0.88
  22    3  0.12

ACGTcount: A:0.33, C:0.29, G:0.31, T:0.08


Consensus pattern (21 bp):   
ACATGGGGCGCCAAGCAAACC

Found at i:21405 original size:39 final size:39

Alignment explanation


    Indices: 21351--21428  Score: 147
    Period size: 39  Copynumber: 2.0  Consensus size: 39

      21341 AAGGCTTGCT

                     *                             
      21351 GACATGTACGGAGAGAAGCATGTCCAAGTCGGGCATGCC
          1 GACATGTACAGAGAGAAGCATGTCCAAGTCGGGCATGCC

                                                   
      21390 GACATGTACAGAGAGAAGCATGTCCAAGTCGGGCATGCC
          1 GACATGTACAGAGAGAAGCATGTCCAAGTCGGGCATGCC

      21429 ATATGGTGAG


Statistics
Matches: 38,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  39   38  1.00

ACGTcount: A:0.29, C:0.23, G:0.32, T:0.15


Consensus pattern (39 bp):   
GACATGTACAGAGAGAAGCATGTCCAAGTCGGGCATGCC
Done.