Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015946.1 Corchorus capsularis cultivar CVL-1 contig15967, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24690

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5526--5552
13
2.1
13
100
0
54
37
7
7
48
1.59
5999--6029
12
2.6
12
89
0
53
48
32
19
0
1.49
15092--15142
22
2.3
22
75
3
57
54
7
11
25
1.63
15692--15725
15
2.2
16
89
5
52
0
2
8
88
0.62
15692--15725
16
2.1
16
89
10
52
0
2
8
88
0.62
16246--16308
28
2.3
28
81
8
76
14
15
9
60
1.59
19918--19961
20
2.3
19
80
7
52
61
0
2
36
1.09
20465--20553
28
3.2
28
64
20
78
39
19
13
28
1.89
20445--20553
55
2.0
55
96
0
200
38
17
14
29
1.89
20549--20592
12
3.6
12
81
6
61
36
11
22
29
1.89
20905--20941
17
2.2
17
90
0
56
45
16
10
27
1.80
21432--21467
10
3.6
10
92
0
63
33
8
19
38
1.82

Tables:   1

The End!