Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015947.1 Corchorus capsularis cultivar CVL-1 contig15968, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97543

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1483--1534
24
2.1
25
85
3
70
48
1
7
42
1.43
2469--2600
63
2.0
65
95
4
241
40
9
4
45
1.58
6236--6281
21
2.2
22
84
7
60
32
2
2
63
1.19
10173--10223
20
2.6
19
76
11
59
33
9
1
54
1.44
22002--22069
12
5.7
12
78
0
82
32
5
16
45
1.71
23605--23699
33
2.9
33
87
0
118
27
30
11
30
1.92
24956--25037
33
2.5
33
80
2
94
29
25
9
35
1.88
27221--27259
16
2.4
16
83
12
53
61
12
0
25
1.31
33033--33067
18
1.9
18
88
11
54
40
2
22
34
1.69
35150--35184
14
2.6
13
86
8
52
80
2
0
17
0.84
36198--36236
14
2.7
15
80
11
55
61
0
23
15
1.33
44283--44377
50
1.9
50
93
0
163
38
9
24
27
1.86
49252--49360
33
3.3
33
93
0
173
44
19
10
26
1.82
52766--52901
47
2.9
47
92
0
227
40
9
9
40
1.70
52835--52968
67
2.0
67
91
2
216
43
10
7
38
1.67
52927--53004
38
2.1
38
87
0
111
34
12
12
39
1.82
52970--53082
47
2.4
47
87
0
163
39
13
14
32
1.84
53064--53251
41
4.5
42
78
8
163
37
17
14
30
1.90
55091--55180
30
3.0
30
98
0
171
21
25
20
33
1.97
59524--59967
167
2.7
165
87
3
622
39
16
14
29
1.88
63397--63423
10
2.7
10
100
0
54
7
18
33
40
1.78
63345--63414
16
4.5
15
75
13
61
5
15
42
35
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63366--63446
41
2.0
42
85
2
110
8
14
35
40
1.77
63962--64033
31
2.3
31
73
4
74
58
12
4
25
1.52
82142--82218
16
4.8
16
72
0
64
6
12
29
50
1.66
96335--96385
12
4.5
11
79
15
52
9
13
0
76
1.02

Tables:   1

The End!