Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015949.1 Corchorus capsularis cultivar CVL-1 contig15970, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21844

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1409--1476
19
3.3
21
66
25
63
57
11
22
8
1.61
1401--1495
41
2.3
41
90
1
154
57
11
23
7
1.58
1906--1952
12
3.9
12
82
0
67
48
17
8
25
1.74
2213--2259
19
2.5
19
76
13
51
48
6
12
31
1.66
2319--2371
19
2.8
18
78
15
54
47
5
13
33
1.66
2411--2456
16
2.9
16
79
20
53
76
0
19
4
0.96
2414--2457
17
2.5
18
85
10
56
77
0
20
2
0.88
3329--3667
71
4.8
70
87
4
486
24
27
17
30
1.97
3329--3671
141
2.4
140
90
1
526
25
27
17
29
1.98
3864--3944
8
10.9
8
74
15
66
30
27
1
40
1.64
3859--4071
22
9.9
22
76
12
165
30
24
3
41
1.72
3872--4086
14
15.1
14
69
19
74
29
23
4
42
1.73
3859--4149
36
8.2
35
68
19
126
29
24
3
42
1.72
3978--4147
8
23.1
7
68
20
66
28
22
4
44
1.71
4002--4147
28
5.0
28
72
17
102
28
22
4
43
1.73
4093--4163
24
2.9
24
87
4
97
30
25
4
39
1.75
4244--4277
14
2.5
14
90
4
52
35
23
0
41
1.55
4222--4386
36
4.4
36
71
15
129
32
21
4
41
1.74
4289--4357
22
3.1
22
85
0
84
31
21
4
42
1.73
4299--4394
14
6.6
14
73
15
54
34
19
4
41
1.71
4259--4393
58
2.3
58
79
15
138
34
20
4
40
1.73
4251--4442
80
2.4
80
85
4
262
30
21
5
42
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4347--4401
22
2.5
23
76
8
60
36
20
5
38
1.75
4368--4433
22
3.0
22
82
6
71
27
21
6
45
1.75
4827--4907
36
2.5
30
75
22
92
32
18
8
40
1.81
4836--4907
36
2.0
36
97
0
135
33
18
8
40
1.80
10084--10156
26
2.7
27
80
4
94
39
24
16
19
1.91
11136--11187
22
2.4
22
73
0
59
48
17
25
9
1.77
21355--21583
85
2.7
87
88
2
347
42
5
16
35
1.71

Tables:   1

The End!