genome.fa.s15951.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015951.1 Corchorus capsularis cultivar CVL-1 contig15972, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70855

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202--277	37	2.1	35	85	4	98	34	13	13	39	1.83
1433--1969	34	15.5	35	81	4	588	18	20	20	40	1.91
1433--1969	69	7.8	69	81	2	578	18	20	20	40	1.91
1979--2599	35	17.6	35	89	4	930	29	14	22	33	1.93
2141--2175	16	2.2	16	94	0	61	28	17	11	42	1.83
2157--2205	23	2.1	23	96	0	89	34	16	16	32	1.91
3886--4201	87	3.7	86	88	3	492	43	5	16	35	1.69
3886--4201	172	1.8	172	92	2	537	43	5	16	35	1.69
10200--10306	23	4.4	23	76	15	99	48	7	6	37	1.57
10249--10305	22	2.5	22	88	2	78	45	7	7	40	1.58
10266--10378	53	2.1	53	93	1	190	50	7	7	34	1.59
10506--10534	2	14.5	2	100	0	58	51	0	0	48	1.00
20888--20933	24	1.9	24	86	8	67	21	6	15	56	1.61
21080--21141	22	3.0	22	72	23	64	25	14	3	56	1.53
21575--21714	33	4.2	32	85	3	136	20	42	27	9	1.83
21575--21714	66	2.1	66	81	5	158	20	42	27	9	1.83
23271--23303	17	2.0	17	88	5	50	48	6	33	12	1.65
25539--25568	13	2.2	14	94	5	53	20	26	10	43	1.83
32203--32248	20	2.3	20	92	0	83	54	19	6	19	1.66
36438--36470	15	2.2	15	94	0	57	45	36	9	9	1.68
44058--44085	2	14.0	2	100	0	56	50	0	0	50	1.00
47960--48000	10	4.2	10	79	14	50	12	0	0	87	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47966--48000	14	2.6	13	86	8	52	11	0	0	88	0.51
51301--51394	29	3.1	30	77	13	88	37	30	12	19	1.89
52264--52708	168	2.7	165	83	3	536	39	15	15	29	1.89
60854--60912	30	2.0	30	96	0	109	32	23	10	33	1.88
60859--60923	30	2.2	30	82	0	76	38	24	6	30	1.80
63948--64015	22	3.0	24	72	27	67	35	1	0	63	1.04
63948--64015	21	3.0	22	76	20	70	35	1	0	63	1.04
63959--64011	18	2.7	19	83	13	63	32	1	0	66	1.03
63960--64032	25	3.0	24	75	18	71	30	1	1	67	1.08
65276--65327	21	2.4	21	75	12	61	32	3	5	57	1.40
65356--65400	3	15.0	3	100	0	90	33	0	0	66	0.92
65515--65557	12	3.5	12	87	6	68	34	13	23	27	1.93
68081--68106	10	2.6	10	100	0	52	30	7	23	38	1.83
68217--68255	12	3.6	12	80	19	50	35	12	25	25	1.92
68213--68255	20	2.1	20	87	12	61	37	11	23	27	1.89

Tables:   1

The End!