Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015952.1 Corchorus capsularis cultivar CVL-1 contig15973, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16974

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23--85
31
2.0
30
82
11
74
41
11
3
44
1.56
2486--2757
22
12.5
21
68
18
114
42
10
14
32
1.80
2539--2603
21
2.8
24
86
11
91
43
9
13
33
1.76
2564--2757
44
4.4
45
72
11
147
42
10
13
33
1.78
2838--3351
22
23.6
22
68
11
209
38
8
16
35
1.80
3005--3075
25
2.9
25
83
4
92
38
5
16
39
1.73
2990--3068
25
3.4
23
76
8
70
41
5
13
39
1.67
5427--5528
30
3.4
30
73
15
95
19
12
28
39
1.89
5570--5665
26
3.4
26
73
26
97
20
12
27
39
1.89
5427--5670
58
4.3
56
76
13
241
20
13
26
39
1.90
5563--5669
26
3.8
29
70
29
81
18
14
25
41
1.89
10449--10514
7
8.9
7
77
11
60
22
0
22
54
1.45
10449--10514
22
3.0
23
84
6
91
22
0
22
54
1.45
10448--10515
15
4.5
15
85
7
93
22
0
25
52
1.47
10459--10515
7
7.7
7
82
9
69
21
0
24
54
1.45

Tables:   1

The End!