Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01015953.1 Corchorus capsularis cultivar CVL-1 contig15974, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35133
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:129 original size:75 final size:75
Alignment explanation
Indices: 23--291 Score: 441
Period size: 75 Copynumber: 3.6 Consensus size: 75
13 AAAATAATAA
*
23 TGAGAATATTTTCTAAATCTTGCCAAATTGTGGGAGATTTAGGAGATATTTTAATAAATAAAATA
1 TGAGAATATTTTCTAAATCTTGCCAAATTGTGGGAGATTTAGGAGATATTTTAAGAAATAAAATA
88 ATAATAAAGT
66 ATAATAAAGT
*
98 TGAGAATATTTTCTAAATCTTGCCAAATTGTGGGAGATTTAGGATATATTTTAAGAAATAAAATA
1 TGAGAATATTTTCTAAATCTTGCCAAATTGTGGGAGATTTAGGAGATATTTTAAGAAATAAAATA
*
163 ACAATAAAGT
66 ATAATAAAGT
* *
173 TGAGAATATTTTCTAATTCTTGCCAAATTGTGGAAGATTTAGGAGATATTTTAAGAAAT-AAATA
1 TGAGAATATTTTCTAAATCTTGCCAAATTGTGGGAGATTTAGGAGATATTTTAAGAAATAAAAT-
*
237 AATAATAAAGAA
65 AATAATAAAG-T
*
249 TGAGAATATTTCTCTAAATCTTGCCAGATTGTGGGAGATTTAG
1 TGAGAATATTT-TCTAAATCTTGCCAAATTGTGGGAGATTTAG
292 AAAATATTAA
Statistics
Matches: 180, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
74 4 0.02
75 137 0.76
76 11 0.06
77 28 0.16
ACGTcount: A:0.41, C:0.07, G:0.17, T:0.35
Consensus pattern (75 bp):
TGAGAATATTTTCTAAATCTTGCCAAATTGTGGGAGATTTAGGAGATATTTTAAGAAATAAAATA
ATAATAAAGT
Found at i:314 original size:77 final size:75
Alignment explanation
Indices: 22--322 Score: 408
Period size: 75 Copynumber: 3.9 Consensus size: 75
12 TAAAATAATA
* *
22 ATGAGAATATTTTCTAAATCTTGCCAAATTGTGGGAGATTTAGGAGATATTTTAATAAATAAAAT
1 ATGAGAATATTTTCTAAATCTTGCCAAATTGTGGGAGATTTAGGAGATATTATAAGAAATAAAAT
87 AATAATAAAG
66 AATAATAAAG
* * *
97 TTGAGAATATTTTCTAAATCTTGCCAAATTGTGGGAGATTTAGGATATATTTTAAGAAATAAAAT
1 ATGAGAATATTTTCTAAATCTTGCCAAATTGTGGGAGATTTAGGAGATATTATAAGAAATAAAAT
*
162 AACAATAAAG
66 AATAATAAAG
* * * *
172 TTGAGAATATTTTCTAATTCTTGCCAAATTGTGGAAGATTTAGGAGATATTTTAAGAAAT-AAAT
1 ATGAGAATATTTTCTAAATCTTGCCAAATTGTGGGAGATTTAGGAGATATTATAAGAAATAAAAT
236 AAATAATAAAG
66 -AATAATAAAG
* * *
247 AATGAGAATATTTCTCTAAATCTTGCCAGATTGTGGGAGATTTAGAAAATATTAAATAAGAATAA
1 -ATGAGAATATTT-TCTAAATCTTGCCAAATTGTGGGAGATTTAGGAGATATT--ATAAG-A-AA
312 TAAAA-AATAAT
60 TAAAATAATAAT
323 TGACAAGAAA
Statistics
Matches: 203, Mismatches: 15, Indels: 11
0.89 0.07 0.05
Matches are distributed among these distances:
74 4 0.02
75 137 0.67
76 11 0.05
77 34 0.17
79 4 0.02
80 7 0.03
81 3 0.01
82 3 0.01
ACGTcount: A:0.44, C:0.06, G:0.16, T:0.34
Consensus pattern (75 bp):
ATGAGAATATTTTCTAAATCTTGCCAAATTGTGGGAGATTTAGGAGATATTATAAGAAATAAAAT
AATAATAAAG
Found at i:7328 original size:14 final size:13
Alignment explanation
Indices: 7302--7349 Score: 73
Period size: 12 Copynumber: 3.8 Consensus size: 13
7292 TTCGATTTGA
7302 AGGAGA-AGAAGG
1 AGGAGAGAGAAGG
7314 AGGAGAGAGAGAGG
1 AGGAGAGAGA-AGG
7328 AGGAGAGAGAA-G
1 AGGAGAGAGAAGG
7340 AGGAGAGAGA
1 AGGAGAGAGA
7350 GGCACGATCT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
12 17 0.50
13 4 0.12
14 13 0.38
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (13 bp):
AGGAGAGAGAAGG
Found at i:7350 original size:14 final size:14
Alignment explanation
Indices: 7304--7350 Score: 60
Period size: 14 Copynumber: 3.2 Consensus size: 14
7294 CGATTTGAAG
7304 GAGAAGAAGGAG-GA
1 GAGAAG-AGGAGAGA
7318 GAGAGAGAGGAGGAGA
1 GAGA-AGAGGA-GAGA
7334 GAGAAGAGGAGAGA
1 GAGAAGAGGAGAGA
7348 GAG
1 GAG
7351 GCACGATCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 15 0.50
15 9 0.30
16 6 0.20
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (14 bp):
GAGAAGAGGAGAGA
Found at i:8536 original size:35 final size:34
Alignment explanation
Indices: 8473--8593 Score: 143
Period size: 35 Copynumber: 3.5 Consensus size: 34
8463 AGTGATCAGG
** *
8473 AAAGAGTAATCAGCGAAGAAAAATGGTAAAGAGT
1 AAAGAGTAATCAGTAAAGAAAAATGGTAAAGAAT
8507 AAAGAGTAATCAGTAAAGGAAAAATGGTAAAGAAT
1 AAAGAGTAATCAGTAAA-GAAAAATGGTAAAGAAT
* ** *
8542 GAAGAGTAATTGGTAGAGGAAAAATGGTAAAGAAT
1 AAAGAGTAATCAGTA-AAGAAAAATGGTAAAGAAT
* *
8577 GAAGAGTAATTAGTAAA
1 AAAGAGTAATCAGTAAA
8594 ATGGTAAAGA
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
34 16 0.21
35 59 0.78
36 1 0.01
ACGTcount: A:0.53, C:0.02, G:0.26, T:0.18
Consensus pattern (34 bp):
AAAGAGTAATCAGTAAAGAAAAATGGTAAAGAAT
Found at i:8555 original size:21 final size:21
Alignment explanation
Indices: 8531--8593 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
8521 AAAGGAAAAA
8531 TGGTAAAGAATGAAGAGTAAT
1 TGGTAAAGAATGAAGAGTAAT
*
8552 TGGT--AG-AGGAA-A--AA-
1 TGGTAAAGAATGAAGAGTAAT
8566 TGGTAAAGAATGAAGAGTAAT
1 TGGTAAAGAATGAAGAGTAAT
*
8587 TAGTAAA
1 TGGTAAA
8594 ATGGTAAAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 14
0.65 0.06 0.29
Matches are distributed among these distances:
14 4 0.12
15 2 0.06
16 2 0.06
17 5 0.16
18 5 0.16
19 2 0.06
20 2 0.06
21 10 0.31
ACGTcount: A:0.49, C:0.00, G:0.29, T:0.22
Consensus pattern (21 bp):
TGGTAAAGAATGAAGAGTAAT
Found at i:8682 original size:40 final size:40
Alignment explanation
Indices: 8603--8696 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 40
8593 AATGGTAAAG
* * *
8603 AGTAAAGAGTAAAATAAAGAGAGATCAGTAAAAAGAAAAT
1 AGTAAAGAGTAAAGTAAAAAGAGATCAATAAAAAGAAAAT
8643 AGTAAAGAGTAAAGTAAAAAGTA-ATCAATAAAGAA-AAAAT
1 AGTAAAGAGTAAAGTAAAAAG-AGATCAATAAA-AAGAAAAT
* **
8683 GGTAATCAGTAAAG
1 AGTAAAGAGTAAAG
8697 AGTAATAGTA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
40 43 0.93
41 3 0.07
ACGTcount: A:0.61, C:0.03, G:0.19, T:0.17
Consensus pattern (40 bp):
AGTAAAGAGTAAAGTAAAAAGAGATCAATAAAAAGAAAAT
Found at i:8727 original size:20 final size:20
Alignment explanation
Indices: 8680--8735 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
8670 ATAAAGAAAA
*
8680 AATGGTAATCAGTAAAGAGT
1 AATGGTAATCAGTAAAGAGC
* *
8700 AATAGTAACCAGT-AAGAAGC
1 AATGGTAATCAGTAAAG-AGC
8720 AATGGTAATCAGTAAA
1 AATGGTAATCAGTAAA
8736 AAATAAAAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 3 0.10
20 24 0.83
21 2 0.07
ACGTcount: A:0.48, C:0.09, G:0.21, T:0.21
Consensus pattern (20 bp):
AATGGTAATCAGTAAAGAGC
Found at i:8750 original size:22 final size:22
Alignment explanation
Indices: 8653--9083 Score: 178
Period size: 22 Copynumber: 20.1 Consensus size: 22
8643 AGTAAAGAGT
*
8653 AAAGTAAAAA-GTAATCAATAA
1 AAAGTAAAAAGGTAATCAGTAA
*
8674 AGAA--AAAATGGTAATCAGTAA
1 A-AAGTAAAAAGGTAATCAGTAA
* * *
8695 AGAGT-AATA-GTAACCAGTAA
1 AAAGTAAAAAGGTAATCAGTAA
* * *
8715 GAAG--CAATGGTAATCAGTAA
1 AAAGTAAAAAGGTAATCAGTAA
*
8735 AAAATAAAAAGGTAATCAGTAA
1 AAAGTAAAAAGGTAATCAGTAA
*
8757 AAAGTAAAATA-GTAATTAG-AA
1 AAAGTAAAA-AGGTAATCAGTAA
*
8778 AAGAGTAAAATGGTAATCAGTAA
1 AA-AGTAAAAAGGTAATCAGTAA
*
8801 AAAGT-AAAAGAGTAATCA--AT
1 AAAGTAAAAAG-GTAATCAGTAA
* * **
8821 AAAGGAAGAATGGTAAAGAGTAA
1 AAAGTAA-AAAGGTAATCAGTAA
** ** **
8844 AGGGTAATCA-GTAAAAAGTAA
1 AAAGTAAAAAGGTAATCAGTAA
8865 AAAG-----A--TAATCAGTAA
1 AAAGTAAAAAGGTAATCAGTAA
*
8880 AAAGTAAAAAGATAATCAGTAA
1 AAAGTAAAAAGGTAATCAGTAA
*
8902 AGAATGAAATAGTAAAAGGTAATCAATAAA
1 A-AA-G---TA--AAAAGGTAATCAGT-AA
* *
8932 AAAGT--AATGATAATCAGTAA
1 AAAGTAAAAAGGTAATCAGTAA
*
8952 AAGGTAAAATA-GTAATCAGT-A
1 AAAGTAAAA-AGGTAATCAGTAA
* * * * * *
8973 AGAGCAAAATGGTAATTAAT-G
1 AAAGTAAAAAGGTAATCAGTAA
* * *
8994 AGAGCAAAATGGTAATCAGTAA
1 AAAGTAAAAAGGTAATCAGTAA
*
9016 AGAGTAAAATA-GTAATCAGTAA
1 AAAGTAAAA-AGGTAATCAGTAA
*
9038 AAAGTAAGAAGGTAATCAGTAA
1 AAAGTAAAAAGGTAATCAGTAA
*
9060 AGAGTAAAATA-GTAATCAGTAA
1 AAAGTAAAA-AGGTAATCAGTAA
9082 AA
1 AA
9084 GATAATCAGT
Statistics
Matches: 308, Mismatches: 63, Indels: 77
0.69 0.14 0.17
Matches are distributed among these distances:
15 12 0.04
16 1 0.00
19 1 0.00
20 41 0.13
21 83 0.27
22 135 0.44
23 13 0.04
24 1 0.00
25 1 0.00
27 2 0.01
28 1 0.00
29 14 0.05
30 3 0.01
ACGTcount: A:0.56, C:0.05, G:0.19, T:0.20
Consensus pattern (22 bp):
AAAGTAAAAAGGTAATCAGTAA
Found at i:8787 original size:8 final size:7
Alignment explanation
Indices: 8730--8890 Score: 51
Period size: 7 Copynumber: 22.3 Consensus size: 7
8720 AATGGTAATC
8730 AGTAAAA
1 AGTAAAA
*
8737 AATAAAA
1 AGTAAAA
**
8744 AGGTAATC
1 A-GTAAAA
8752 AGTAAAA
1 AGTAAAA
8759 AGTAAAA
1 AGTAAAA
**
8766 TAGTAATT
1 -AGTAAAA
8774 AG-AAAA
1 AGTAAAA
8780 GAGTAAAA
1 -AGTAAAA
* **
8788 TGGTAATC
1 -AGTAAAA
8796 AGTAAAA
1 AGTAAAA
8803 AGTAAAA
1 AGTAAAA
*
8810 GAGTAATCA
1 -AGTAA-AA
8819 A-TAAAGGA
1 AGTAAA--A
*
8827 AG--AAT
1 AGTAAAA
* *
8832 GGTAAAG
1 AGTAAAA
*
8839 AGTAAAG
1 AGTAAAA
* **
8846 GGTAATC
1 AGTAAAA
8853 AGTAAAA
1 AGTAAAA
8860 AGTAAAA
1 AGTAAAA
**
8867 AGATAATC
1 AG-TAAAA
8875 AGTAAAA
1 AGTAAAA
8882 AGTAAAA
1 AGTAAAA
8889 AG
1 AG
8891 ATAATCAGTA
Statistics
Matches: 109, Mismatches: 33, Indels: 24
0.66 0.20 0.14
Matches are distributed among these distances:
5 1 0.01
6 2 0.02
7 75 0.69
8 30 0.28
9 1 0.01
ACGTcount: A:0.59, C:0.03, G:0.19, T:0.19
Consensus pattern (7 bp):
AGTAAAA
Found at i:8987 original size:21 final size:21
Alignment explanation
Indices: 8937--9179 Score: 173
Period size: 22 Copynumber: 11.7 Consensus size: 21
8927 ATAAAAAAGT
* *
8937 AATGATAATCAGTAAAAGGTAA
1 AATGGTAATCAGTAAGA-GTAA
* *
8959 AATAGTAATCAGTAAGAGCAA
1 AATGGTAATCAGTAAGAGTAA
* * * *
8980 AATGGTAATTAATGAGAGCAA
1 AATGGTAATCAGTAAGAGTAA
9001 AATGGTAATCAGTAAAGAGTAA
1 AATGGTAATCAGT-AAGAGTAA
* *
9023 AATAGTAATCAGTAAAAAGTAA
1 AATGGTAATCAGT-AAGAGTAA
9045 GAA-GGTAATCAGTAAAGAGTAA
1 -AATGGTAATCAGT-AAGAGTAA
*
9067 AATAGTAATC------AGTAA
1 AATGGTAATCAGTAAGAGTAA
*
9082 AA-GATAATCAGTAAGAGTAA
1 AATGGTAATCAGTAAGAGTAA
** * *
9102 AACAGTAACCAGTAACAG-AA
1 AATGGTAATCAGTAAGAGTAA
* *
9122 AAGTGGTAATTAGTAAGAGTCA
1 AA-TGGTAATCAGTAAGAGTAA
*
9144 AATAGTAATCAGTAAAGAGTAA
1 AATGGTAATCAGT-AAGAGTAA
*
9166 AA-GGTGATCAGTAA
1 AATGGTAATCAGTAA
9180 TTCAAACAGT
Statistics
Matches: 174, Mismatches: 34, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
14 5 0.03
15 7 0.04
20 13 0.07
21 72 0.41
22 75 0.43
23 2 0.01
ACGTcount: A:0.51, C:0.07, G:0.21, T:0.21
Consensus pattern (21 bp):
AATGGTAATCAGTAAGAGTAA
Found at i:9091 original size:14 final size:15
Alignment explanation
Indices: 9018--9095 Score: 54
Period size: 15 Copynumber: 5.3 Consensus size: 15
9008 ATCAGTAAAG
*
9018 AGTAAAATAGTAATC
1 AGTAAAAGAGTAATC
**
9033 AGTAAAA-AGTAAGA
1 AGTAAAAGAGTAATC
** **
9047 AGGT-AATCAGTAAAG
1 A-GTAAAAGAGTAATC
*
9062 AGTAAAATAGTAATC
1 AGTAAAAGAGTAATC
9077 AGTAAAAGA-TAATC
1 AGTAAAAGAGTAATC
9091 AGTAA
1 AGTAA
9096 GAGTAAAACA
Statistics
Matches: 50, Mismatches: 10, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
14 20 0.40
15 30 0.60
ACGTcount: A:0.55, C:0.05, G:0.18, T:0.22
Consensus pattern (15 bp):
AGTAAAAGAGTAATC
Found at i:9103 original size:35 final size:37
Alignment explanation
Indices: 9040--9116 Score: 113
Period size: 35 Copynumber: 2.1 Consensus size: 37
9030 ATCAGTAAAA
* * *
9040 AGTAAGAAGGTAATCAGTAAAGAGTAAAATAGTAATC
1 AGTAAGAAGATAATCAGTAAAGAGTAAAACAGTAACC
9077 AGTAA-AAGATAATCAGT-AAGAGTAAAACAGTAACC
1 AGTAAGAAGATAATCAGTAAAGAGTAAAACAGTAACC
9112 AGTAA
1 AGTAA
9117 CAGAAAAGTG
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 21 0.57
36 11 0.30
37 5 0.14
ACGTcount: A:0.53, C:0.08, G:0.19, T:0.19
Consensus pattern (37 bp):
AGTAAGAAGATAATCAGTAAAGAGTAAAACAGTAACC
Found at i:9116 original size:42 final size:41
Alignment explanation
Indices: 9070--9179 Score: 114
Period size: 42 Copynumber: 2.6 Consensus size: 41
9060 AGAGTAAAAT
*
9070 AGTAATCAGTAAAAGATAATCAGTAAGAGTAAAACAGTAACC
1 AGTAA-CAGTAAAAGGTAATCAGTAAGAGTAAAACAGTAACC
* * * *
9112 AGTAACAG-AAAAGTGGTAATTAGTAAGAGTCAAATAGTAATC
1 AGTAACAGTAAAA--GGTAATCAGTAAGAGTAAAACAGTAACC
* *
9154 AGTAAAGAGTAAAAGGTGATCAGTAA
1 AGT-AACAGTAAAAGGTAATCAGTAA
9180 TTCAAACAGT
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
40 4 0.07
41 3 0.05
42 41 0.73
43 4 0.07
44 4 0.07
ACGTcount: A:0.50, C:0.08, G:0.21, T:0.21
Consensus pattern (41 bp):
AGTAACAGTAAAAGGTAATCAGTAAGAGTAAAACAGTAACC
Found at i:9247 original size:13 final size:13
Alignment explanation
Indices: 9231--9282 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
9221 GTAAAAAGTG
*
9231 GTAATAAAAGAGA
1 GTAAGAAAAGAGA
9244 GTAAGAAAAGAGTA
1 GTAAGAAAAGAG-A
* *
9258 ATTAGTAAAA-AGA
1 GTAAG-AAAAGAGA
9271 GTAAGAAAAGAG
1 GTAAGAAAAGAG
9283 TAAAAATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
12 4 0.13
13 17 0.55
14 6 0.19
15 4 0.13
ACGTcount: A:0.60, C:0.00, G:0.25, T:0.15
Consensus pattern (13 bp):
GTAAGAAAAGAGA
Found at i:14438 original size:27 final size:26
Alignment explanation
Indices: 14384--14444 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
14374 CTAAATTTCC
14384 ATTATTTTAATAATGGAATAATTAAAAT
1 ATTA-TTTAATAATGGAAT-ATTAAAAT
14412 ATTATTTAATAATGGCAAT-TTAGAAAT
1 ATTATTTAATAATGG-AATATTA-AAAT
14439 A-TATTT
1 ATTATTT
14445 GAAAAAAAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
26 8 0.26
27 16 0.52
28 7 0.23
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (26 bp):
ATTATTTAATAATGGAATATTAAAAT
Found at i:22339 original size:11 final size:11
Alignment explanation
Indices: 22319--22353 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
22309 TTGATAGCGC
22319 AACAAAAACAA
1 AACAAAAACAA
*
22330 AACGAAAACAA
1 AACAAAAACAA
22341 AACAAAAACAA
1 AACAAAAACAA
22352 AA
1 AA
22354 AACAGAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.80, C:0.17, G:0.03, T:0.00
Consensus pattern (11 bp):
AACAAAAACAA
Found at i:27109 original size:34 final size:34
Alignment explanation
Indices: 27055--27119 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
27045 TCACCTACGC
*
27055 AGCGTAGCACGCGCGTGCAAAACCTTGTGTCGCG
1 AGCGTAGCACGCGCGGGCAAAACCTTGTGTCGCG
* *
27089 AGCGTAGCGCGTGCGGGCAAAACCTTGTGTC
1 AGCGTAGCACGCGCGGGCAAAACCTTGTGTC
27120 TTCTATCATG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.20, C:0.28, G:0.34, T:0.18
Consensus pattern (34 bp):
AGCGTAGCACGCGCGGGCAAAACCTTGTGTCGCG
Found at i:34441 original size:33 final size:33
Alignment explanation
Indices: 34398--34467 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
34388 CGCTGAGTTG
* *
34398 GAAGGTAGATTAGATGGTGTTGTAGGAGCCCTC
1 GAAGGAAGATTAGATGGTGTTGAAGGAGCCCTC
34431 GAAGGAAGATTAGATGGTGTTGAAGGAGCCCTC
1 GAAGGAAGATTAGATGGTGTTGAAGGAGCCCTC
34464 GAAG
1 GAAG
34468 ATCTGATAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.29, C:0.11, G:0.37, T:0.23
Consensus pattern (33 bp):
GAAGGAAGATTAGATGGTGTTGAAGGAGCCCTC
Done.