Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015956.1 Corchorus capsularis cultivar CVL-1 contig15977, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52933

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4843--4880
18
2.1
18
100
0
76
31
15
13
39
1.86
6006--6499
214
2.3
214
83
3
600
38
14
18
28
1.89
7687--7711
11
2.3
11
100
0
50
48
0
32
20
1.50
7818--7865
24
2.0
25
83
4
62
70
6
6
16
1.28
9170--9194
13
1.9
13
100
0
50
24
8
24
44
1.80
11374--11601
38
6.1
38
82
8
272
35
14
16
32
1.89
13101--13133
17
1.9
17
100
0
66
36
24
6
33
1.80
15400--15656
58
4.3
60
83
6
285
24
22
14
37
1.92
15612--15691
35
2.3
35
86
0
106
25
25
11
38
1.88
15552--15750
93
2.2
92
92
0
335
25
22
13
38
1.91
15647--15841
58
3.4
58
91
0
318
23
25
14
37
1.92
15490--15808
151
2.1
154
84
4
423
24
23
14
37
1.92
15781--16013
85
2.7
86
90
3
332
26
23
13
36
1.91
15877--15921
23
2.0
23
90
0
72
22
26
15
35
1.94
16336--16458
65
1.9
65
85
8
171
30
21
12
35
1.90
18259--18325
14
4.8
14
82
10
75
0
17
0
82
0.68
18262--18319
11
5.4
11
83
10
75
0
18
0
81
0.70
18262--18325
31
2.1
30
88
2
92
0
18
0
81
0.70
21795--21954
38
4.2
38
95
0
275
33
16
18
31
1.93
21768--21949
76
2.5
74
89
7
275
34
15
18
31
1.92
23564--23629
34
1.9
34
84
6
89
57
18
9
15
1.63
32223--32358
68
2.0
68
92
0
227
24
11
28
36
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52193--52270
30
2.7
29
87
2
111
19
29
12
38
1.89
52351--52408
30
2.0
29
83
10
73
37
13
25
22
1.91

Tables:   1

The End!