genome.fa.s15957.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015957.1 Corchorus capsularis cultivar CVL-1 contig15978, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51161

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1743--1806	21	3.0	21	84	4	85	40	17	9	32	1.81
9900--9958	25	2.5	24	88	5	84	35	22	0	42	1.54
9968--10035	26	2.6	26	90	0	109	54	10	1	33	1.43
9968--10085	52	2.4	51	79	13	122	54	10	1	33	1.44
10469--10512	2	23.5	2	82	13	58	52	0	0	47	1.00
10469--10518	22	2.4	22	86	6	68	54	0	0	46	1.00
10469--10518	20	2.5	19	84	9	64	54	0	0	46	1.00
11686--11715	15	2.0	15	93	0	51	43	0	30	26	1.55
13432--13684	123	2.1	123	82	0	299	38	18	10	32	1.85
13555--13826	146	1.9	147	86	0	393	38	16	9	34	1.82
16595--16659	23	2.9	22	79	4	67	40	15	12	32	1.84
16596--16965	22	16.7	22	70	13	111	36	15	9	38	1.80
16750--16812	23	2.7	23	90	4	92	41	11	4	42	1.61
16931--17003	19	3.6	20	81	7	85	28	16	9	45	1.79
17085--17312	22	10.5	21	71	14	110	32	14	9	42	1.78
17112--17292	44	4.1	43	73	14	138	33	14	8	42	1.77
17317--17385	22	3.2	22	78	10	70	34	18	7	39	1.79
17490--17619	68	1.9	66	81	6	154	39	17	9	33	1.82
17534--17620	22	4.0	21	80	11	95	36	17	9	36	1.82
17519--17621	22	4.6	22	73	16	86	37	16	8	36	1.80
17790--17827	19	2.0	20	85	15	53	63	2	5	28	1.30
18139--18198	31	1.9	31	93	6	104	46	3	20	30	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18297--18339	22	2.0	22	85	0	59	44	4	6	44	1.52
18312--18420	41	2.7	41	88	2	150	34	9	8	47	1.65
18719--18776	23	2.5	23	88	0	80	43	13	6	36	1.71
18765--18812	16	2.7	18	81	9	55	41	14	8	35	1.76
18405--18961	22	25.6	22	69	10	220	35	16	9	37	1.82
18405--19146	44	17.4	43	68	15	235	35	16	9	37	1.81
18673--19028	191	1.9	190	79	11	406	35	16	9	39	1.81
19069--19146	22	3.6	22	85	1	104	35	15	7	41	1.76
19043--19168	22	5.8	21	78	7	85	34	11	9	44	1.73
19042--19187	44	3.3	44	78	5	152	32	12	10	43	1.77
19245--19340	38	2.6	37	82	15	126	58	11	16	13	1.63
19245--19340	37	2.6	38	82	15	128	58	11	16	13	1.63
19490--19557	31	2.2	31	86	7	93	48	5	14	30	1.68
19498--19563	31	2.1	32	88	5	100	48	4	18	28	1.67
19592--19638	2	23.5	2	87	8	69	48	0	4	46	1.21
21249--21291	6	7.2	6	97	0	77	86	0	13	0	0.58
22642--22789	80	1.9	78	90	2	233	52	10	12	25	1.69
30264--30672	75	5.5	75	88	3	610	23	32	28	15	1.95
30264--30672	149	2.7	149	92	0	674	23	32	28	15	1.95
34329--34375	21	2.2	21	92	0	76	46	10	8	34	1.69
35993--36021	6	4.8	6	100	0	58	31	0	0	68	0.89
37149--37255	50	2.1	50	98	0	205	53	1	17	27	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42902--42947	22	2.1	22	88	8	67	32	8	23	34	1.86
45354--45403	2	27.0	2	80	15	63	44	2	54	0	1.11
45360--45394	14	2.5	14	100	0	70	42	0	57	0	0.99
48089--48177	18	4.9	18	83	0	106	25	26	29	17	1.98

Tables:   1

The End!