Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015959.1 Corchorus capsularis cultivar CVL-1 contig15980, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58641

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67--140
29
2.5
30
80
4
96
35
16
31
17
1.92
2279--2305
13
2.1
13
100
0
54
44
18
14
22
1.86
6991--7026
14
2.6
14
100
0
72
52
19
5
22
1.66
9723--9798
29
2.6
29
77
10
82
34
23
13
28
1.92
13055--13088
11
3.2
10
84
15
50
29
2
17
50
1.61
14757--14834
34
2.3
34
84
4
95
33
8
7
50
1.63
20194--20228
11
3.3
10
85
14
52
28
2
17
51
1.59
23578--23612
3
11.7
3
100
0
70
31
0
0
68
0.90
24751--24776
12
2.2
12
100
0
52
76
0
7
15
0.99
29241--29327
30
2.9
30
89
1
122
31
20
14
33
1.93
32708--32810
27
3.8
27
89
2
136
25
36
13
24
1.92
35157--35233
31
2.5
31
97
0
145
31
25
18
24
1.97
37177--37376
110
1.8
110
94
0
355
29
14
15
40
1.87
40740--40771
15
2.1
15
100
0
64
28
15
18
37
1.92
52194--52497
46
6.5
46
84
3
365
10
29
20
38
1.87
52195--52463
143
1.9
143
88
0
403
10
28
21
39
1.86
55291--55340
9
5.7
9
72
13
50
48
0
2
50
1.12

Tables:   1

The End!