genome.fa.s15961.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015961.1 Corchorus capsularis cultivar CVL-1 contig15982, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6296

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1357--1392	19	1.9	18	88	5	54	33	22	2	41	1.68
2020--2185	55	3.0	54	79	6	140	19	19	3	57	1.54
2036--2319	28	10.7	26	70	21	130	19	22	2	55	1.56
2100--2181	26	2.9	29	81	12	91	20	20	1	57	1.48
2140--2233	48	2.0	47	83	12	120	18	23	1	57	1.47
2121--2228	47	2.3	45	81	10	112	19	23	0	56	1.48
2171--2207	19	1.9	19	88	0	56	16	24	0	59	1.37
2055--2291	129	1.8	129	81	12	299	19	23	2	55	1.54
2140--2235	47	2.0	48	86	9	135	18	23	1	56	1.48
2100--2287	101	1.9	101	83	8	249	19	22	1	55	1.51
2055--2327	129	2.1	129	80	13	294	19	23	2	54	1.55
2243--2414	65	2.6	64	82	9	195	16	25	2	55	1.53
2304--2376	27	2.7	28	84	16	100	16	24	2	56	1.54
2266--2356	37	2.4	37	78	12	96	15	24	2	58	1.49
2435--2736	22	13.7	23	72	15	121	22	18	4	54	1.61
2435--2499	23	3.0	21	76	10	67	21	12	4	61	1.48
2519--2736	43	5.1	43	72	13	164	22	20	3	53	1.61
2594--2651	7	8.3	7	77	7	55	17	18	3	60	1.50
2594--2651	29	2.1	27	87	6	80	17	18	3	60	1.50
2519--2736	22	10.2	22	76	12	170	22	20	3	53	1.61
2598--2672	20	3.7	20	83	7	80	20	17	5	57	1.59
2718--2762	15	3.1	15	80	6	65	15	17	2	64	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2721--2762	7	5.9	7	83	5	57	14	16	2	66	1.35
5479--5505	6	4.5	6	100	0	54	55	14	0	29	1.40
5502--5546	13	3.5	13	90	3	74	55	8	13	22	1.65
5502--5554	25	2.1	25	89	6	81	58	9	11	20	1.60

Tables:   1

The End!