Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015964.1 Corchorus capsularis cultivar CVL-1 contig15985, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23668

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3284--3501
21
10.5
22
71
17
128
21
19
6
51
1.70
3284--3576
64
4.6
63
72
18
207
21
19
6
52
1.67
3247--3480
122
1.9
121
83
6
303
20
20
7
51
1.71
3355--3575
44
5.1
43
79
11
220
20
19
5
53
1.64
3355--3576
22
10.2
21
76
11
173
20
19
5
54
1.64
3511--3567
15
3.9
15
75
11
64
21
15
5
57
1.57
3513--3576
29
2.2
28
83
10
76
20
20
4
54
1.62
3362--3581
108
2.0
107
82
10
261
20
20
5
53
1.65
3557--3681
35
3.6
35
85
4
155
19
24
2
54
1.56
3634--3847
7
30.7
7
66
13
93
19
23
1
55
1.52
3677--3767
35
2.6
34
91
1
137
19
23
2
54
1.55
3683--3770
34
2.5
35
90
1
133
20
23
1
54
1.51
3590--3852
83
3.1
83
86
1
346
19
22
2
55
1.55
3757--3847
35
2.6
34
87
3
128
16
24
2
57
1.51
3826--3852
14
1.9
14
100
0
54
22
18
7
51
1.70
3959--4066
40
2.7
40
92
0
171
22
23
3
50
1.64
4039--4116
32
2.4
32
89
0
120
20
28
3
47
1.67
4104--4158
29
2.0
29
82
10
71
12
20
3
63
1.43
4219--4291
32
2.3
31
86
6
101
23
23
6
46
1.76
4281--4378
38
2.5
39
74
8
92
24
20
6
48
1.72
10124--10158
12
2.9
12
84
16
54
48
0
0
51
1.00
11031--11507
238
2.0
238
100
0
954
24
14
13
47
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13259--13304
23
2.0
23
95
0
83
58
19
8
13
1.60
13792--13866
24
3.2
24
68
21
77
10
33
20
36
1.87
13789--13878
46
2.0
46
100
0
180
11
33
20
35
1.88
15040--15127
30
3.0
30
93
3
151
21
22
15
39
1.91
15040--15127
29
3.0
29
94
1
149
21
22
15
39
1.91
15820--15899
28
2.8
28
86
5
106
37
13
23
25
1.92
19186--19215
11
2.7
11
100
0
60
20
10
36
33
1.86
19291--19315
12
2.1
12
100
0
50
8
40
44
8
1.63
23148--23494
76
4.6
76
93
1
590
16
26
30
26
1.97

Tables:   1

The End!